Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00944 ATGCGTTCCAGGAGTTCAGTAGCCTCTCTTCCGTTAACCTTTGCACAGACTCCACGACTCTGTTATGGTTTCGTCAACCTTTTCTCACACCAAGAAGCATTTCAAGCAATCGAGTCAAAGAATCATTCTTCCCTTAATGGAAAAGTGATAAGGGTCACATGGGCACATCGTCACCATTTGGCAAGGAAGGGTGACACTAGCAAATGGACTGTGTTTGTTAAGAACTTAGATGAATCCATAGATGATGCGGGACTACACGATTTATTTCAAAAATATGGGAATATTTTGTCCAGTAAAGTTGAGATGTCTAAAGATGGGAAGAGCACAGGATGTGGCTTTATTCAATTTGAGTCACAGGAATCTGCAAGTGCTGCTATCGTAGAACTGCATGAATCTATTGTGAGAGATAATCAGATATATGTTCCAAAGGATGACGAGGATGATAAAGGCTTTGAATCTATTTACGATGATATCCTAGATGATGCTGGACAAGCCATGGGAGCAACACATAGATCACAATTAGAAGAATTCATTGGAAACTTAGAGGCATCAAACCAAGTCTCGGAAGATCATGGCTTACATGTAAATAGAAGTAAGACAAAATTAGGTTCAATGAACCTGCATGTAGCCAGGGCACAAAAGAAGGTTCAATGTGATTCTGAGCAAAGACCACATAATCAGTTTGAGGAGACACGTAAGGAACAAATCTTGAAACATAAGGGATCAGACATTTATGTGAAGAATATTGCTGATGGTGTTAGTGACGAAGAACTACGAGATCACTTTAGTGCATGTGGCACAATAACTTCTGCAGAAGTTAAGCGAGATAACGAAGGGAGAAGCAAGGGGTTGGTTTTGTCCGCTTCTCTAACCCTGAGGAGGCTACTAAAGCTGTGA 897 0.408 MRSRSSVASLPLTFAQTPRLCYGFVNLFSHQEAFQAIESKNHSSLNGKVIRVTWAHRHHLARKGDTSKWTVFVKNLDESIDDAGLHDLFQKYGNILSSKVEMSKDGKSTGCGFIQFESQESASAAIVELHESIVRDNQIYVPKDDEDDKGFESIYDDILDDAGQAMGATHRSQLEEFIGNLEASNQVSEDHGLHVNRSKTKLGSMNLHVARAQKKVQCDSEQRPHNQFEETRKEQILKHKGSDIYVKNIADGVSDEELRDHFSACGTITSAEVKRDNEGRSKGLVLSASLTLRRLLKL* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00944 298 SUPERFAMILY RNA-binding domain, RBD 20 143 IPR035979 GO:0003676
Rops6g00944 298 Gene3D - 9 64 IPR012677 -
Rops6g00944 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Rops6g00944 298 Gene3D - 180 286 IPR012677 -
Rops6g00944 298 SUPERFAMILY RNA-binding domain, RBD 243 283 IPR035979 GO:0003676
Rops6g00944 298 Gene3D - 65 162 IPR012677 -
Rops6g00944 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 286 IPR000504 GO:0003723
Rops6g00944 298 PANTHER RNA BINDING PROTEIN 39 283 - -
Rops6g00944 298 SMART rrm1_1 70 142 IPR000504 GO:0003723
Rops6g00944 298 SMART rrm1_1 243 293 IPR000504 GO:0003723
Rops6g00944 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 284 IPR000504 GO:0003723
Rops6g00944 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00944 Rops-Chr6 22869006 22871096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00944 20 284 Eukaryotic Initiation Factors Gene Family AT2G36660 42.215 2.46e-56 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00944 K13126 - gmx:100804671 240.736