Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00943 ATGGGAAAAGGATCTGGAATTTCATCTCCCGAAGGGTCCCAGGGATCAGAAATGCTACATAGCATGCTTGCTACTACTATAACAGAGCGGCAGAAGCAGGTACTCGGGGAGCATCTTTACCCACTTATCCAAAAACTCAAGCCTAGCCTAGCAGCAAGGATTACAGGAATGTTTTTGGAGATGGACAATAGAGAACTGCTGGCACTCCTGGAATCACCAGAGACTCTTTCTGCAAAGGTGGAAGAAGCTGAGCAAGTGATTGAGAAGACCAAAGTTTCTGCATTCCACATCTGCCCAAGACTGGAGAGGCTAAGCATGTGCCCAGTGGATGCGCCAGCAAGAGATGGAAAAAGTATAAATTTTACTAGAGAATAG 375 0.4613 MGKGSGISSPEGSQGSEMLHSMLATTITERQKQVLGEHLYPLIQKLKPSLAARITGMFLEMDNRELLALLESPETLSAKVEEAEQVIEKTKVSAFHICPRLERLSMCPVDAPARDGKSINFTRE* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00943 124 SUPERFAMILY PABC (PABP) domain 18 91 IPR036053 GO:0003723
Rops6g00943 124 SMART poly_2 27 90 IPR002004 GO:0003723
Rops6g00943 124 Gene3D - 13 92 - -
Rops6g00943 124 Pfam Poly-adenylate binding protein, unique domain 23 87 IPR002004 GO:0003723
Rops6g00943 124 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 15 92 IPR002004 GO:0003723
Rops6g00943 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 21 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00943 Rops-Chr6 22867033 22867898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00943 19 87 Eukaryotic Initiation Factors Gene Family AT1G49760 55.072 2.47e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00943 K13126 - gmx:100804671 124.02