Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00932 ATGGAAGTTAAACAACAAGCACTGACCGAGACACCTCCAGCAAACTGTGGGAACCATGAGAAGAAGAAGCGATTAACAAGTGACCAGCTTGACTCATTGGAAAGTTGTTTCCAGAAGGAGATAAAGTTGGACCCTGATAGGAAGATGAAGCTCTCTAAGGAGTTAGGACTTCAGCCTCGTCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGACCAAGCAACTTGAACATTTATACGATTCACTTAAACAGGAATTTGATGTCATATCCGAGGAGAAACAGAAACTTGAGGAAGAGGTTATGAAGTTGAAGGCCATGTTGAGAGACCATGCATCAAGAACACAAGTATCAGCAGGTTATACAGAAATATCTGGAGAAGAAACAGTGGAAAGCAAATCAGAGGCTCTGCGTTGTTCCAACAGGCCACGACGAGGAACGATTCATCATCGTCATCATCATCATCAGCAGCAGCAGCAGCAGAATATTGCAGAGGGAAACGGTTGTTACACTTTGGAGGATTATAATAACACTGTTCCTGCAGTTATGCACTATTGGCCTGGTGTTCCTTCTAATTATCCCTAA 591 0.4315 MEVKQQALTETPPANCGNHEKKKRLTSDQLDSLESCFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDSLKQEFDVISEEKQKLEEEVMKLKAMLRDHASRTQVSAGYTEISGEETVESKSEALRCSNRPRRGTIHHRHHHHQQQQQQNIAEGNGCYTLEDYNNTVPAVMHYWPGVPSNYP* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00932 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 150 IPR045224 GO:0003700
Rops6g00932 196 Pfam Homeobox associated leucine zipper 76 110 IPR003106 GO:0006355|GO:0043565
Rops6g00932 196 MobiDBLite consensus disorder prediction 1 27 - -
Rops6g00932 196 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Rops6g00932 196 SUPERFAMILY Homeodomain-like 12 78 IPR009057 -
Rops6g00932 196 SMART HOX_1 19 80 IPR001356 GO:0003677
Rops6g00932 196 Coils Coil 68 116 - -
Rops6g00932 196 Gene3D - 15 84 - -
Rops6g00932 196 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Rops6g00932 196 CDD homeodomain 21 77 IPR001356 GO:0003677
Rops6g00932 196 Pfam Homeodomain 21 74 IPR001356 GO:0003677
Rops6g00932 196 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677
Rops6g00932 196 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677
Rops6g00932 196 FunFam Putative homeobox-leucine zipper protein ATHB-51 18 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00932 Rops-Chr6 22749572 22750536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00932 17 115 Homeobox Transcription Factor Family AT2G36610 64.486 3.58e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops6g00932 Homeodomain 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00932 - - gmx:100778007 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00932 6 22749572 22750536 Rops6g00932 6 22749572 22750536 ECH
Rops6g00932 6 22749572 22750536 Rops8g03418 8 73242047 73243819 PCT