Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00928 ATGGCCTCTTGCGACGACGACGACGATTTCTCACTCCTCCGTGACGATAACCATCACCACCTCCACCAATCCTACGCGCCGCCGCACCACCACTTCTCCACCGCCTCTGTCCAATCGAAACCCGTCGCCGACGAAGACGCCGAAGATTACGGAAATCCGTTCGACGACGACGCGGGTAGCGAGAAGCGAAAGGATCGAGACGAGATAGGCGACGGAACGACGCCGTACGGCTTCAACAAAAGGTCCAAGTCGACATCTAGCGGCGGCACCGGTGCCGGCGCAGAGTACCGGAAGGATCGAGAAGAATGGAGCGACACGGCGATCGTGTGCCTCCTTGAAGCATACACAGAGAAATTCACGCAACTGAATCGTGGAAACCTAAGGGGAAGGGATTGGGAAGAGGTTGCGGCGGTGGTTAGCGAACGGTGTGATAATCAATCGAAGAGTGTGGAACAGTGCAAAAACAAGGTTGATAACTTGAAGAAGAGGTATAAGCTTGAGAGGCATAGGATGAACAATGGTTGCATCTCCACAAGTCACTGGCCTTGGTTTAAGCAAATGGAACACATCGTCGGAAATTCTCTACCTTCGAAGTTTTCCGATGAGGATAAAACCCTAGCTTCGGTCGCCAATTCACCCAGGCAATCCAAGAGACACGGAGTGGCAACGCCCAGCAGTGGAGGTCAAGTAAACAACACAAAGTCCAAAGCATTGTCAAACCTTAGGTGGCGGAGGGTAGTGCTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAATATCGACCCTAAGGTGGCCATGTTAGTATCAAATGAAGTGGCAATGGCTTCCCGCCTTGGTGTGGAGGTGGCGATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCATTATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGTGCCATCAGACATCTTGAGAAAGGAAGAGTTGTGATATTTGGTGGGATTGGTTTTGGCGCTGGCAATCCACTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTCAGGCAGTCCTCAAAGGTACTAACGTAGATGGTGTATATGACTGCAACTCCCGAGACAACAACTTCACTTTTGAGCACATATCCTTCAGGGAGCTGGTGTCAAGAGGTGTCACCACAATGGATATGTCAGCACTGACATTCTGTGATGAAAATGATATTCCTGTGGTGGTTTTTAATCTATTGGCGCCTGGGAACATCTCAAAAGCTTTGTGTGGAGATCAAGTTGGCACACTAATTGACCGAACTGGAGCAATAAGCTAA 1449 0.4907 MASCDDDDDFSLLRDDNHHHLHQSYAPPHHHFSTASVQSKPVADEDAEDYGNPFDDDAGSEKRKDRDEIGDGTTPYGFNKRSKSTSSGGTGAGAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCDNQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISTSHWPWFKQMEHIVGNSLPSKFSDEDKTLASVANSPRQSKRHGVATPSSGGQVNNTKSKALSNLRWRRVVLKISGAALTGSDTCNIDPKVAMLVSNEVAMASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSLLLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGAGNPLFSTDIAAALRASELNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELVSRGVTTMDMSALTFCDENDIPVVVFNLLAPGNISKALCGDQVGTLIDRTGAIS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00928 482 Hamap Uridylate kinase [pyrH]. 241 476 IPR015963 GO:0005737|GO:0006221|GO:0033862
Rops6g00928 482 MobiDBLite consensus disorder prediction 77 91 - -
Rops6g00928 482 Gene3D - 233 481 IPR036393 -
Rops6g00928 482 FunFam Aspartate/glutamate/uridylate kinase family protein 103 166 - -
Rops6g00928 482 SUPERFAMILY Carbamate kinase-like 242 475 IPR036393 -
Rops6g00928 482 Gene3D - 103 166 - -
Rops6g00928 482 FunFam Uridylate kinase isoform A 235 481 - -
Rops6g00928 482 Coils Coil 143 170 - -
Rops6g00928 482 MobiDBLite consensus disorder prediction 55 71 - -
Rops6g00928 482 MobiDBLite consensus disorder prediction 205 234 - -
Rops6g00928 482 Pfam Myb/SANT-like DNA-binding domain 100 190 IPR044822 -
Rops6g00928 482 Pfam Amino acid kinase family 245 455 IPR001048 -
Rops6g00928 482 CDD AAK_UMPK-PyrH-Ec 244 476 IPR015963 GO:0005737|GO:0006221|GO:0033862
Rops6g00928 482 PANTHER URIDYLATE KINASE 96 481 - -
Rops6g00928 482 MobiDBLite consensus disorder prediction 20 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00928 Rops-Chr6 22680305 22685481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00928 59 194 Trihelix Transcription Factor Family AT3G14180 34.532 5.97e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g00928 AA_kinase 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00928 - - gmx:100805176 821.617