Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00927 ATGAACAAGGTTCATGTTCATGTTCATCCCATGATGAACAACCATGTCTTGTTCTTCTTCTTCTTTCTTTTTCTATTACCATGTCTTACACTGAGTCTTCACCATAATGACACTCATGCACTTACCCTCTTCCGCCACCAAACTGACTCACACGGCCACCTTCTCTCCAACTGGACCGGCGGTGATGCTTGCTCCTCCGCATGGCACGGCGTCGTTTGCACCCCAAATGGCCGAGTCACTTCCCTTTCTCTCCCTTCCCTCAACCTCCGAGGACCCATTGAAGCTCTCTCTCCGCTCTCCCACCTCCGCCTCCTAGACCTCCACGACAACCGTCTAAACGGCACCGTTTCGCCGTTGTTCCTCTCAAACTGCACCAACCTCAAGCTCCTTTACCTCGCCGAAAATGACTTTTCCGGCAAGATCCCACCTGAGATATCCTCGCCAAAAGGCCTCCTCCGTCTTGACCTCTCCGACAACAACATCGCCGGCAATGTTCCAGGCGAAATTTCCCATCTTTCTCAGCTCCTCACTTTGAGGCTTCAAAACAACCAACTCTCCGGCGACATTCCCGACCTCTCCGCCGCCATGCCGAACCTCACGGAGCTCAATATGACCAACAACGAATTCTCCGGTCATTTACCAAACGCCATGTTAAACAAGTTCGGTGATGAAAGCTTCTCCGGTAATGAAGGTCTATGTGGTGCAACACCATTGCCGGTTTGCACCTTCAATGAGAATAACCCTCCTTCTTCTTCTGAACCGGATCAAACCGTTCCTTCTAACCCAAGTTCATTCCCTGAAACAAGTGTGATAGCTAGACCTGGAAGCAAACCACGTAAAGGGTTGAGACCTGGTGCAATTGTAGCTATTGTGGTGGCTACCTGTGTTGCATTGTTGATTGTTATATCTTTTGTAGTGGCTCATTGTTGTGCAAGAGGGAGAAATTCTAATAACTCTAACTCATTTGGGGGGAGTAGTGAGAAGAGGAAGAGCGGGAGCAGTTATGGGAGTGATAAGAAGGTGTATGCAAATGGTGGAGGGTGTGATAGTGATGGAACTAGTGGAACTGATAGGAGTAAGCTTGTGTTTTTTGATAGGAGGAGTGAGTTTGAGTTGGAGGATTTGTTGCGTGCTTCTGCTGAGATGCTTGGGAAGGGTAGTTTGGGGACTGTTTATAGGGCAGTGCTTGATGATGGATGTACTGTTGCTGTGAAGAGGCTTAAAGATGCTAACCCTTGTCCCAGGCATGAGTTTGAGCAGTATATGGATGTCATTGGGAAGCTTAACCAGCCTAATATTGTTAGACTCAGAGCTTATTACTATGCCAAGGAAGAAAAACTTCTTGTCTATGATTATCTCTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCTGGGAGAATTCCATTGGATTGGACAACAAGAGTAAGCTTGGTGTTAGGGGCAGCCAGAGGGCTAGCTCGGATTCATGCAGAGTATAGTGCAGCTAAAGTACCTCATGGGAACGTGAAATCTTCAAACGTGCTTCTTGACAAGAATGGTGTTGCTTGCATCTCTGACTTTGGCTTGTCATTGCTGTTGAACCCTGTTCATGCCATTGCAAGATTGGGAGGGTACAGAGCACCTGAACAAGCAGAACACAAGAGGCTGTCTCAGCAGGCTGATGTGTACAGTTTTGGAGTCTTGCTGTTGGAAGTTCTTACAGGGAGAGCTCCTTCATTACAATACCCTTCACCAGCTCGTCCTCGTATGGATGAAGAGGAACAAGCTGTGGATCTTCCCAAATGGGTTCGCTCAGTTGTGAAGGAGGAGTGGACAGCTGAAGTGTTTGACCAAGAACTCCTTCGCTACAAAAACATTGAGGAAGAGCTTGTTTCAATGCTGCATGTTGGTTTGTCTTGTGTGGTTCCACAGCCAGAGAAGAGGCCAACCATGGCAGAGGTTGCAAAGATGATTGAGGATATCAGGGTGGAACAATCTCCTCTTGGAGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCATTCCCACAACTGAAGATGGTTTAGCTTAG 2067 0.4765 MNKVHVHVHPMMNNHVLFFFFFLFLLPCLTLSLHHNDTHALTLFRHQTDSHGHLLSNWTGGDACSSAWHGVVCTPNGRVTSLSLPSLNLRGPIEALSPLSHLRLLDLHDNRLNGTVSPLFLSNCTNLKLLYLAENDFSGKIPPEISSPKGLLRLDLSDNNIAGNVPGEISHLSQLLTLRLQNNQLSGDIPDLSAAMPNLTELNMTNNEFSGHLPNAMLNKFGDESFSGNEGLCGATPLPVCTFNENNPPSSSEPDQTVPSNPSSFPETSVIARPGSKPRKGLRPGAIVAIVVATCVALLIVISFVVAHCCARGRNSNNSNSFGGSSEKRKSGSSYGSDKKVYANGGGCDSDGTSGTDRSKLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRHEFEQYMDVIGKLNQPNIVRLRAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRVSLVLGAARGLARIHAEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEHKRLSQQADVYSFGVLLLEVLTGRAPSLQYPSPARPRMDEEEQAVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLSCVVPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSIPTTEDGLA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00927 688 FunFam pollen receptor-like kinase 1 348 452 - -
Rops6g00927 688 Pfam Protein kinase domain 381 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00927 688 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 453 667 - -
Rops6g00927 688 MobiDBLite consensus disorder prediction 244 270 - -
Rops6g00927 688 Gene3D Phosphorylase Kinase; domain 1 351 452 - -
Rops6g00927 688 MobiDBLite consensus disorder prediction 244 280 - -
Rops6g00927 688 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 660 IPR046959 -
Rops6g00927 688 Gene3D Ribonuclease Inhibitor 153 241 IPR032675 -
Rops6g00927 688 Gene3D Ribonuclease Inhibitor 36 150 IPR032675 -
Rops6g00927 688 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Rops6g00927 688 MobiDBLite consensus disorder prediction 318 338 - -
Rops6g00927 688 Pfam Leucine Rich repeats (2 copies) 174 210 IPR025875 -
Rops6g00927 688 SUPERFAMILY Protein kinase-like (PK-like) 381 655 IPR011009 -
Rops6g00927 688 ProSiteProfiles Protein kinase domain profile. 377 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00927 688 MobiDBLite consensus disorder prediction 662 688 - -
Rops6g00927 688 Gene3D Transferase(Phosphotransferase) domain 1 453 676 - -
Rops6g00927 688 FunFam Nuclear pore complex protein NUP107 34 191 - -
Rops6g00927 688 SUPERFAMILY L domain-like 34 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00927 Rops-Chr6 22676847 22679701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00927 30 684 Receptor kinase-like Gene Family AT2G36570 68.018 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops6g00927 Pkinase 2.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00927 - - gmx:100804135 1012.29