Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00922 ATGGAAGAAACTGTGAACGACAACAACACTGTTTCTGTAGGGTCACCCCCTCAACAATCAGTTACCACCACCACCACCACCACCTCAGTGCCTATGGTGATGAACATGAACATGAACGTTGGGGGGAACACTGGTGTGACAGCAACAATTCCTGCAGTGGCACCAGTGACAGCAACTGTGACAACAACACCAGGAAACAGTGGTGGAGGACAAGGGAGTTTTGATTTGTTTGGTAAAAAGAAGAGAGGGAGACCAAGGAAGTATGACTCAGATGGGAACTTGAGGTTGAAGTACCAAAGTGCAACATCACCACCTTCTTCACAACAAGGTTTCACTTTGTCTACAACAACTGAGTTTTCTTCCAAAAGGGGTCGTGGTAAACCAACTGGTTTTGCCAACTACCAACCCCTTGCTTCTTTTGGTGAGGTTTTTGCAAACACTGCTGCTGGGGACTTTACACCGCATGTTGTGACTGTTTACACTGGAGAGGATGTTGCTGGAAAGATCTTGACATTTGCCCAAAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCTATCTCTAATGTCACCATACGCCAACCTGGTTCTTCTGGTGGCATATTGACTTACGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACGGTGTCAGACAATAGTGGCATGAGAAGTAGAACTGGTGGATTGAGTGTCTCACTAGCTGGCCCTGATGGTCGGGTGATAGGAGGTGGTGTTGCTGGTCTATTGACAGCTGCTGGTCCCATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTTACAACAAGACTCATCATAAAAGGAAGTACCAACGTGAACAAACAGTGGCATCCCCTCCTTCAGCTGTTCCAGAAACAGTGACAGCAGCAAGGCCTATCTCACAAGCAAATGTTGATGGGGAGAACTTTCTGATACCTATGTCTCAGTTACCACCAAATCAAAGTCAGAGAGAATCTGTAAGTGTTAATAGTGATAAACAGAACCTAGATGCCACACTTGATGCTGCTACTTGGAATGGTTCTGAGGAATTTTCAGATCAAAGGACATCCCCTGACATCAATATTTCTTTGCCTGATGAATAG 1116 0.4534 MEETVNDNNTVSVGSPPQQSVTTTTTTTSVPMVMNMNMNVGGNTGVTATIPAVAPVTATVTTTPGNSGGGQGSFDLFGKKKRGRPRKYDSDGNLRLKYQSATSPPSSQQGFTLSTTTEFSSKRGRGKPTGFANYQPLASFGEVFANTAAGDFTPHVVTVYTGEDVAGKILTFAQKSPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDNSGMRSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGYNKTHHKRKYQREQTVASPPSAVPETVTAARPISQANVDGENFLIPMSQLPPNQSQRESVSVNSDKQNLDATLDAATWNGSEEFSDQRTSPDINISLPDE* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00922 371 Gene3D - 154 288 - -
Rops6g00922 371 MobiDBLite consensus disorder prediction 348 365 - -
Rops6g00922 371 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Rops6g00922 371 ProSiteProfiles PPC domain profile profile. 149 293 IPR005175 -
Rops6g00922 371 MobiDBLite consensus disorder prediction 77 93 - -
Rops6g00922 371 CDD DUF296 153 267 IPR005175 -
Rops6g00922 371 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 278 - -
Rops6g00922 371 MobiDBLite consensus disorder prediction 348 371 - -
Rops6g00922 371 MobiDBLite consensus disorder prediction 61 127 - -
Rops6g00922 371 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g00922 371 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 337 IPR039605 GO:0003680
Rops6g00922 371 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00922 Rops-Chr6 22582577 22586407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00922 79 339 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.699 6.32e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00922 - - gmx:100779227 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00922 6 22582577 22586407 Rops6g00922 6 22582577 22586407 ECH