Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00916 ATGCTCTGCAAAAACAAGCCACCTCCCTCCGAGACTCTCGCTTGCAATACCTGTGCCACTCCCTGGCACGTTCCGTGCCTTCCCCTCCCTCCAACCACCCTTCTTTATTGGGACTGCCTTGATTGTTCCCACCTCGAACCCAACCATGTCGCCGCCCCTGCTCCGCCTCCCGGCGACCTCGTCTCCGTCATCCGTGCTATTCAGTCTGATACTTCACTCACAGAGGAAAAGAAGGCCAAGAAGCGCCAGGAGCTTGTGGGTGGGTCCTCGAAGCCATCTGGTGATATGAAGAACAATGGAAATGGGGGGATTGATATCTTCAATGGAAGCTTAAACAAGCTCCAGTCCTTTGACCAGAAGTTTGAGAACATGAATGAGGCCTTGAGACTGAGTTGTAAGAAAGGTTATCCAGTTCGTGTTGTCAGGTCCCACAAGGAGAAACGTTCATCATATGCACCAGATGCTGGAGTGCGATATGACGGGGTTTACAGAATATAG 498 0.5161 MLCKNKPPPSETLACNTCATPWHVPCLPLPPTTLLYWDCLDCSHLEPNHVAAPAPPPGDLVSVIRAIQSDTSLTEEKKAKKRQELVGGSSKPSGDMKNNGNGGIDIFNGSLNKLQSFDQKFENMNEALRLSCKKGYPVRVVRSHKEKRSSYAPDAGVRYDGVYRI* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00916 165 MobiDBLite consensus disorder prediction 72 101 - -
Rops6g00916 165 SUPERFAMILY PUA domain-like 99 165 IPR015947 -
Rops6g00916 165 Pfam SAD/SRA domain 111 165 IPR003105 -
Rops6g00916 165 ProSiteProfiles YDG domain profile. 43 165 IPR003105 -
Rops6g00916 165 SMART G9a_1 47 165 IPR003105 -
Rops6g00916 165 SUPERFAMILY FYVE/PHD zinc finger 2 47 IPR011011 -
Rops6g00916 165 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 92 IPR045134 -
Rops6g00916 165 Gene3D - 93 165 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00916 Rops-Chr6 22454249 22454875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00916 1 88 C2H2 Transcription Factor Family AT5G39550 47.059 1.39e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00916 K10638 - gmx:100786796 114.005