Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00908 ATGGAGAATTCACGTAGACCGTTCGATAGATCAAGAGAACCGGGTCCAAAGAAGCCCCGATTGATGGAAGAACCGGACCGTGCTCTGAACCCTAGTGCCCGACCATTTCCTCAGCGACCAGTGGCTTCTGGGATTACAACGTTGTCATCTACAAGGTTTAAAACAAACGACAGAGATTTGGGAAGCAGTGATTTTGGTCGCCGTGGTGGTGGTGATGGCGGTTACCAGCCGCAGCCGCTGCCGTTTCTGGAGCTTGTGGCTCAGTATAAGAGTGCGCTTGCTGAGCTTACTTTCAACTCGAAACCAATAATTACCAATTTGACCATAATTGCAGGAGAGAATCAAGCTGCAGAGAAGGCCATTGCAGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCCGAGGTATTCTGCAAGGCATATAGACAAGTGGATCCTTCTGTCCATCAAAGTATGAGGCATCTTTTTGGAACCTGGAAAGGAGTCTTTCCTCCTCAAACCCTTCAGGCTATTGAGAAGGAACTGGGCTTCACTCCTGCAGTTAATGGTTCATCTTCTGCATCTGCTACACTTAGAAGTGATTCACAGTCACAACGTCCTCCTCATAGTATTCATGTAAATCCAAAGTATTTTGAAAGACAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGGAGTTGATGATATGACCGGAGCAATGGAAAACTCAAATGACAACCCAGAGATGCCTGAAAGAGCTTTGGGTGTTTCACGACCATGGGTGGATCCTAGTGTTACTGTTAACATCCACTTATCTGAAAATAATCAGCGCACTCATAGAGATGCATTCAATGATTCTGTTCTGGAAAAGAGTATCAGTGCATCCTATAGAGGCAATGAATATGGTTCTGACCTTCCAAGGAATTTGGGCATGGGTATTGGCAGAACTGGGGGTAGGGTGACTGAGTTAGGACGTGACAAAAGTTGGTACAATAAAGCAGGTGGTGGTGTTGCAGGGACCATATCTGGGCAAAGAAATGGTTTCAGTGTCAAGCACAGTTTTTCAAAGACTGAAGCATCCATGATTTTGGATGCACATCATCAGCCAACACAGAACATAACTAGTGTAGGGAGAAGTGTGATGTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTTCACGTGGGATGAGATGAACACTGGATTGACTGGTCATGGTGCTGCAAATGTCCCTAACAACTTGAACAAAGATGTTTGGACTGCTGATGATGAGAATTTGGAAGTTGAAGATAACCACTACCAAATCAGAAATCCTTTTGGGGAAAATGTTGATAGAGAAATGCCCATTGAATCTCAAGCTACTGAAAGGAAACAATTACCTGTATTTCGGCGTCATCCATCATTATCCTGGCAATTGCAGGAGCAGCACTCAGTTGATGAGTTGAATCAGAAGCCAGGTCACACTGATGGATTTGTGTCCACGCTTGGTGCCCTACCAGCCAATACAAATTCTTCTGCTGCTAGGATGGGGAATCGTGCTTTCCTGCCAAATGTAACAATAGGATTGACAGGAACTGTGGGACAACAATTTCATTCTGTGGGAGCTGAATCCCCTGCTGGACAATCACCTTTGCAACAACAGTGTCCACCGCCAGTTGGGAACTTGCGAAGATTACAGCTAAAAGACTTGCAGGGTCCATTATCTTCAAGGACATTTCAGCCAAGGCATCAGCAGCAGGCAGGCTCTTCTCACACTGAAATAAGTATCAAGAATGAGAAGCCACCCCTGTCCAAAGCTCCTCTAGCCAGAGAAACTTCAGAAAAGTCAATCACAGGTCGTTTGGAAGCTTCCGCTGCGAAGAGTGGAATATTCTCCAACATGCCAGTTACTAGTAGTCTTCCTACTTCAAGTAACTTGGATACAGGGAATCTTCCATCTCAATTAGGGGTTCAATCTTCCCGGTCAGGTGGTCCTTCCCCTGCCACGTTACTTTCTTCAGTTTCTGCAATTGCGTCAACATCTTCTTTAGGTCCTCCCAGTGATAATTCATCTGCTCTGCCAAAAATACCTCAAAGAAAGGCTGGACAACCACCAAGGGCATCTACTCTACCACCAGCTTCCTCTAATATCAGCAGTGCCTCAGCCCAGACATCAAATGCTACCAATAATACCTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAGAAACCGAGACACCAGCTAAGGTGCCATCTGAGATACTGACTCAATTGGAAGATCAAAGTGACAGCAGTACCACCAGTAGCTCTTTGCCCGTTGCTTCAGTTTCTGGTACTGCTGCTGTCCCAGTCCCTTCTACCAAAGACGAGGTAGACAATGCTGCAAAAACACCTATATCCTTATCTGAATCAACCAGCACAGAAATCAGAAGCCTCATTGGCTTTGAATTTAAGCCTGATGTAATCCGAGAATTGCATCCATCTGTGATTAGCGAATTATTTGATGATTTTCCACATCATTGTAACATTTGTGGCCTTGGGCTTAAATTCCAAGAACAGCTTAATAGACACTTGGAGTGGCATGCGACAAGAGAAAGAGAACACAATGGTCAAATTAGGGCATCAAGATGGTATCCGAAGTCAAGCGACTGGATTGTTGGCAAGGCTGAATATCCATCGGAGAATGAGTTTACTGATTCTGTAGATACATATGGCAAGGGAACAGACAGAAATCAAGAGGATGCAATGGTTCTAGCAGATGAAAATCAATGCTTGTGTGTGCTGTGTGGTGAGCTATTTGAAGACTTTTACTGTCAGGAAAATGGTGAGTGGATGTTCAAAGAGGCTGTTTACATGACTAATTCTGATAGCAATAGTGAGATGGGAATTAAAGACGTGAGTACTGGAAGGGGTCCCATCATTCATGCAAGATGCTTATCAGATAACTCGATTACCAGTGTCCTCAAGATGGAACAGGATTAA 3054 0.4427 MENSRRPFDRSREPGPKKPRLMEEPDRALNPSARPFPQRPVASGITTLSSTRFKTNDRDLGSSDFGRRGGGDGGYQPQPLPFLELVAQYKSALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQAIEKELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVNPKYFERQRLQQSSRTKGGVDDMTGAMENSNDNPEMPERALGVSRPWVDPSVTVNIHLSENNQRTHRDAFNDSVLEKSISASYRGNEYGSDLPRNLGMGIGRTGGRVTELGRDKSWYNKAGGGVAGTISGQRNGFSVKHSFSKTEASMILDAHHQPTQNITSVGRSVMSNSWKNSEEEEFTWDEMNTGLTGHGAANVPNNLNKDVWTADDENLEVEDNHYQIRNPFGENVDREMPIESQATERKQLPVFRRHPSLSWQLQEQHSVDELNQKPGHTDGFVSTLGALPANTNSSAARMGNRAFLPNVTIGLTGTVGQQFHSVGAESPAGQSPLQQQCPPPVGNLRRLQLKDLQGPLSSRTFQPRHQQQAGSSHTEISIKNEKPPLSKAPLARETSEKSITGRLEASAAKSGIFSNMPVTSSLPTSSNLDTGNLPSQLGVQSSRSGGPSPATLLSSVSAIASTSSLGPPSDNSSALPKIPQRKAGQPPRASTLPPASSNISSASAQTSNATNNTLNPIANLLSSLVAKGLISAETETPAKVPSEILTQLEDQSDSSTTSSSLPVASVSGTAAVPVPSTKDEVDNAAKTPISLSESTSTEIRSLIGFEFKPDVIRELHPSVISELFDDFPHHCNICGLGLKFQEQLNRHLEWHATREREHNGQIRASRWYPKSSDWIVGKAEYPSENEFTDSVDTYGKGTDRNQEDAMVLADENQCLCVLCGELFEDFYCQENGEWMFKEAVYMTNSDSNSEMGIKDVSTGRGPIIHARCLSDNSITSVLKMEQD* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00908 1017 MobiDBLite consensus disorder prediction 782 806 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 556 572 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 1 27 - -
Rops6g00908 1017 ProSitePatterns Zinc finger C2H2 type domain signature. 865 885 IPR013087 -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 590 613 - -
Rops6g00908 1017 ProSiteProfiles CID domain profile. 81 209 IPR006569 -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 724 744 - -
Rops6g00908 1017 Pfam CID domain 90 200 IPR006569 -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 1 73 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 42 56 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 782 818 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 212 277 - -
Rops6g00908 1017 SUPERFAMILY ENTH/VHS domain 85 209 IPR008942 -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 648 744 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 648 712 - -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 556 576 - -
Rops6g00908 1017 Gene3D - 83 206 IPR008942 -
Rops6g00908 1017 SMART 558neu5 84 206 IPR006569 -
Rops6g00908 1017 MobiDBLite consensus disorder prediction 212 233 - -
Rops6g00908 1017 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 1009 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Rops6g00908 1017 MobiDBLite consensus disorder prediction 590 636 - -
Rops6g00908 1017 CDD CID_Pcf11 86 202 IPR047415 -
Rops6g00908 1017 FunFam polyadenylation and cleavage factor homolog 4 78 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00908 Rops-Chr6 22387505 22395175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00908 73 243 C2H2 Transcription Factor Family AT4G04885 57.310 8.05e-54 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g00908 CID 3.6e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00908 K14400 - gmx:100807857 1449.88