Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00903 ATGGAAATGGAAGATCATCACCTTCACCACCATCATCATCAACATCAACATCAGCAGCAGTATGACATGACCACCGATTTCAGGCAACTTGTGTCGACCCATTTCCCCTCTATACCGACACAACCCACGGCGGAGCTTTTTCCCGGTCACCGGAATCTGACACCGTACGAGGTTATGATGTTCGGTCCACGTGGACTTCATGACTTTGCTTCCACCGATTCTGCTGCAGCCAGCATCACTGTACCCACTCCTGTTGCCACCACCAGTGCTTCAACTCCTTCCCTTAGTGGCTTAGAGGCTGACACCGTACCCTCCATCGGTGGAGACGCATCCACCGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGACTTGACCCTAAATTCAAAGAAGCTAATCAAAAAGGACCCTTATGGGATGAAGTTTCTAGGATCATGTCTGAGGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAAACTAAAGAAGGTAAGGCAGGAAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGAGAAAACAGTAACCAAACTTCGGTTCCAGAAACCAATTTTGTAAGCACCCTTCATTTCCAGACAAGCAGCCAGGTCCCCTCTCAATCAAATCAAGAAATGTTACAGGCTCACAACAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGATTTTGACACATCATCATCTGAAGACAATGATCATAGCAATAATGGGAATGACTCCATGGAGAAGAGGAGAAAGAGGAAGAGTGGAAGGAGCTGGAAGGGAAAGATAAAAGAATTCATTGACTCACAGATGAAGAAGCTGGTGGAGAATCAAGAGGAATGGTTGAATAAACTCATGAAGACACTGGAAGAGAAGGAAAAGGAGAGGATGTTAAGAGAGGAGGAGTGGAGGAAACACGAGGCAAGAAGGTTAGAGAGGGAGCAAAAGTTTTGGGCTAAAGAGAGGGAATGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTGCAAAATTTAACAGGAAGAGAAATAAAGGCTGAAGCTCCTGATGAGGGTGTGATAGCAGCTGAAATTCAAAATCACAGTGAAAATCAGAATGAAGATGGAAGTGAAATCTTGAATAGCACTGTCAGAGGTGCTGATAGCTGGCCAGAATCTGAGATTACAAGGCTTCAACGGTTGAGAACTGAGATGGAGACTAGGTTTCCACAAAGTGGGTCCTCAGAAGAGGTTAAGTGGGAGGAAGTAGCAAACAAAATGGCTTGTTTTGGCTATGAAAGGACTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAGCAACTATCCAAGGGATGCCAAGGAAGGAAGCAAGAAGCTCAAGGACAACTCAAGAACTTGTTTTTACTTTAATAACAATGATCAATCTTCCCTATACAATCAAGGTAGTACCTATTGTGACACCAATGATCAAAGGCAGGAGATAGGAAAGCTACAAACAAATGATGGTTCTTCACCTTCTAATTCCAATGTTGGGAATGTTGCTCAGGCTGATAGCTGCTTTCCCTTCTTGATGAGTGAGGGAGGAAATTTGTGGGAGAACTACGTCTTAAAACTCAGTAAAACAAACCAAAACCATTGA 1695 0.4383 MEMEDHHLHHHHHQHQHQQQYDMTTDFRQLVSTHFPSIPTQPTAELFPGHRNLTPYEVMMFGPRGLHDFASTDSAAASITVPTPVATTSASTPSLSGLEADTVPSIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSVPETNFVSTLHFQTSSQVPSQSNQEMLQAHNKHCDSLSLTNSTDFDTSSSEDNDHSNNGNDSMEKRRKRKSGRSWKGKIKEFIDSQMKKLVENQEEWLNKLMKTLEEKEKERMLREEEWRKHEARRLEREQKFWAKEREWIEARDAALMEALQNLTGREIKAEAPDEGVIAAEIQNHSENQNEDGSEILNSTVRGADSWPESEITRLQRLRTEMETRFPQSGSSEEVKWEEVANKMACFGYERTALMCKEKWESISNYPRDAKEGSKKLKDNSRTCFYFNNNDQSSLYNQGSTYCDTNDQRQEIGKLQTNDGSSPSNSNVGNVAQADSCFPFLMSEGGNLWENYVLKLSKTNQNH* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00903 564 Coils Coil 296 327 - -
Rops6g00903 564 ProSiteProfiles Myb-like domain profile. 407 465 IPR001005 -
Rops6g00903 564 MobiDBLite consensus disorder prediction 247 282 - -
Rops6g00903 564 MobiDBLite consensus disorder prediction 247 265 - -
Rops6g00903 564 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00903 564 SMART sant 111 174 IPR001005 -
Rops6g00903 564 SMART sant 404 467 IPR001005 -
Rops6g00903 564 FunFam trihelix transcription factor PTL-like 115 177 - -
Rops6g00903 564 FunFam Trihelix transcription factor GT-2 408 470 - -
Rops6g00903 564 Gene3D - 115 177 - -
Rops6g00903 564 Gene3D - 408 469 - -
Rops6g00903 564 ProSiteProfiles Myb-like domain profile. 107 172 IPR001005 -
Rops6g00903 564 CDD GT1 114 179 - -
Rops6g00903 564 PANTHER FI21293P1 84 545 - -
Rops6g00903 564 CDD GT1 408 472 - -
Rops6g00903 564 Pfam Myb/SANT-like DNA-binding domain 406 492 IPR044822 -
Rops6g00903 564 Pfam Myb/SANT-like DNA-binding domain 114 200 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00903 Rops-Chr6 22339562 22342552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00903 34 559 Trihelix Transcription Factor Family AT5G03680 48.592 6.72e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Rops6g00903 Myb_DNA-bind_4 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00903 - - aprc:113870891 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00903 6 22339562 22342552 Rops6g00903 6 22339562 22342552 ECH
Rops8g03445 8 73652822 73656176 Rops6g00903 6 22339562 22342552 PCT