Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00902 ATGCGTTCAAGTTCTCAATCTACTTCTAGTAGTAGCAAATCAGAAACTGGTCGTCACCCAGTTTACCGTGGAGTGAGGCGTAGGAATAGTGGAAAATGGGTATCTGAAATTCGAGAGCCGAAGAAGCCTAATAGGATTTGGTTAGGAACATTCCCTACACCTGAAATGGCTGCTGTTGCTTATGATGTTGCTGCTTTTGCTCTTAAGGGTAAGGATGCTGAGCTCAACTTTCCTGACTCAGCTTCTTCATTGCCTGTTCCTGCTTCTTTATCTGCCCGTGATATTCAGGTTGCTGCTGCTAGTGCTGCAGCTGCTGCTGGAGCAGCTAAAGATGCTTTATCTGGTGGTGTTGAAGAAAGCCAAGCTGGGAATGTTGTTTCAGTGGCACAAAATCAAGAAGGGCTTAACCACTTTGTGGATGAAGATTTGATCTTTGATATGCCCAATGTTTTGGTTAATATGGCACATGGAATGTTGCTTAGTCCTCCTCCTTTTGACATTGGTGGGGAGGATGCTACCTCAGATGAAGAGCCAAGTTTGTGGAATTTCCCTTAA 555 0.445 MRSSSQSTSSSSKSETGRHPVYRGVRRRNSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAAFALKGKDAELNFPDSASSLPVPASLSARDIQVAAASAAAAAGAAKDALSGGVEESQAGNVVSVAQNQEGLNHFVDEDLIFDMPNVLVNMAHGMLLSPPPFDIGGEDATSDEEPSLWNFP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00902 184 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Rops6g00902 184 MobiDBLite consensus disorder prediction 1 37 - -
Rops6g00902 184 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Rops6g00902 184 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Rops6g00902 184 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Rops6g00902 184 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Rops6g00902 184 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Rops6g00902 184 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Rops6g00902 184 MobiDBLite consensus disorder prediction 1 17 - -
Rops6g00902 184 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Rops6g00902 184 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 182 IPR045277 GO:0003700
Rops6g00902 184 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00902 Rops-Chr6 22307208 22307762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00902 11 184 AP2-EREBP Transcription Factor Family AT2G36450 62.431 1.51e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00902 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00902 - - vvi:100261339 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00902 6 22307208 22307762 Rops6g00902 6 22307208 22307762 ECH
Rops8g03446 8 73695171 73696041 Rops6g00902 6 22307208 22307762 PCT