Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00901 ATGATACAAAAAATTGAAAAACGAAGGGCTGGTAGGAAGAAGTTCCATGAAACCAGACACCCCATTTACAAAGGGGTGAGACAGAGGAATGGGAAGTGGGTTTGTGAGTTACGACAACCATATAACAACAAATCTCGTGTTTGGCTTGGAACTTTTGCTCACCCTGACATGGCAGCTATAGCCTATGATGTTGCAGCTTTAGCTTTCAAAGGTGAAAACGCTTCCTTGAATTTCCCACAAGCAGCTACCTCGTTGCCACGTCTTAATTCTAGAACTTCTTCCATTAGAGCCATTCAGTTTGCAGCAATGCAAGCAGCTGAGAAGCACTTTTCTTGCAGGGAAATCCAGGTCAGTGATGATATTGCAAGGGATGTTTCTGGTTCTGAGTTGTTGTCCTTGGATGTGGTGGGTTTAGAGGGAGATTCTACAAGTTTCTTTTGGGATGAAGAGGAAGTGTTCAACATGCCAGGGTTGTTGAATAGCTTGGCTGAAGGGTTGATTATCACACCACCAGCTTTGCAGAGAGGATTCAATTGGGTTGGTGGGGAAACTACTGTGGACTTGACTCTATGGGGAAACTGA 582 0.4433 MIQKIEKRRAGRKKFHETRHPIYKGVRQRNGKWVCELRQPYNNKSRVWLGTFAHPDMAAIAYDVAALAFKGENASLNFPQAATSLPRLNSRTSSIRAIQFAAMQAAEKHFSCREIQVSDDIARDVSGSELLSLDVVGLEGDSTSFFWDEEEVFNMPGLLNSLAEGLIITPPALQRGFNWVGGETTVDLTLWGN* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00901 193 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Rops6g00901 193 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Rops6g00901 193 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Rops6g00901 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 191 IPR045277 GO:0003700
Rops6g00901 193 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Rops6g00901 193 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Rops6g00901 193 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Rops6g00901 193 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Rops6g00901 193 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00901 Rops-Chr6 22260324 22260905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00901 7 191 AP2-EREBP Transcription Factor Family AT4G25470 45.455 5.72e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g00901 AP2 1.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00901 - - gmx:100778541 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00901 6 22260324 22260905 Rops6g00901 6 22260324 22260905 ECH
Rops6g00901 6 22260324 22260905 Rops8g03446 8 73695171 73696041 PCT