Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00888 ATGATGGACTCACTCAAGCATCTGTTTTCCCTCTCATGTCTTTCCCTAGTACTTGTACTTCTCTCAGGACAAATGGGGCTGCAAGCTGAAGCTCGCAAGCTCAATAATCCCTCAAAAAAATTGTTTGTTTTTGGGGACTCGTATGTTGATACCGGCAACACTAGAAAAGATGCACCTGGTTCCTGGAAAGACCCTTATGGCATAACCTTTCCCGGAAAACCCGCCGGAAGATTCTCCGACGGTAGAGTTTTAACTGACTTCATTGCCAAGTATTTGGGACTGAAATCGCCACTCCCCTACCAATTTAGGAAACAGAAGCCGCAGAATTTGAAGTACGGGATGAACTTTGCCTATGGTGGTACTGGTGTATTTGCTTCAAACCCAAATATGACAGTCCAGATCGATTTCTTCAAGCAGCTCATCGAAGAAAAAGTGTATAATGCCTCAGATCTCAGCAACTCAGTAGCTCTTGTATCTGTGGCTGGAAATGACTACAATGATTACTTGTTCAAAAATGGCTCTGCGGTGGGTCTCTTGATTTTAATCCCCAAAGTGGTTAAGCAAACCACAACCAATTTGATTCGCATCCAAGAATTAGGAGTTAAGAAAATTGTCGTGGATGGTCTACAACCCCTTGGTTGCGTTCCTCTAATCACAAATTCAACCTCCTTCCGACAGTGCAATAACATCGTTAACGACCTCGTAGGTTTCCACAACTACTTGTTAAGCAAATCTGTGACCAAGTTAAACCAACAAAGCAAGGATCAGAACACCTTCATAATTCTTGATCTTTATGACAGTTTCATGTCAGTGCTTAACAACCCATCGGCTAATAACATTACGGACCAGTTCAAGCCATGCTGCGTTGGGGTAAGCAGTGAGTATTATTGTGGGAGCGTAGACAAGAACAATGTGAAGAAATATAAGGTTTGTGATAATCCCAAATCAGCTTTCTTTTGGGATGTGTTGCACCCAACACAAGCTGGTTGGAATGCTGTGTATAACAAGTTGGAGAAGGGAGCTCTGCATCAACTTCAATACTAG 1044 0.4272 MMDSLKHLFSLSCLSLVLVLLSGQMGLQAEARKLNNPSKKLFVFGDSYVDTGNTRKDAPGSWKDPYGITFPGKPAGRFSDGRVLTDFIAKYLGLKSPLPYQFRKQKPQNLKYGMNFAYGGTGVFASNPNMTVQIDFFKQLIEEKVYNASDLSNSVALVSVAGNDYNDYLFKNGSAVGLLILIPKVVKQTTTNLIRIQELGVKKIVVDGLQPLGCVPLITNSTSFRQCNNIVNDLVGFHNYLLSKSVTKLNQQSKDQNTFIILDLYDSFMSVLNNPSANNITDQFKPCCVGVSSEYYCGSVDKNNVKKYKVCDNPKSAFFWDVLHPTQAGWNAVYNKLEKGALHQLQY* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00888 347 CDD SGNH_plant_lipase_like 41 340 IPR035669 -
Rops6g00888 347 SUPERFAMILY SGNH hydrolase 38 337 - -
Rops6g00888 347 Pfam GDSL-like Lipase/Acylhydrolase 41 336 IPR001087 GO:0016788
Rops6g00888 347 Gene3D SGNH hydrolase 29 341 IPR036514 -
Rops6g00888 347 PANTHER OSJNBB0059K02.9 PROTEIN 9 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00888 Rops-Chr6 22018526 22021681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00888 17 333 Pollen Coat Proteome AT1G75930 28.116 1.37e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00888 - - gmx:100789208 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03468 8 74042198 74046289 Rops6g00888 6 22018526 22021681 PCT