Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00885 ATGGCGGAAGAGCATCCATGTCAAGCTCCCGAAGGTCACCGACTCTGTGCCAATAACTGTGGCTTCTTCGGTAGCCTAGCCACCATGAATCTATGTTCCAAATGCTACGGTGAAATTCGTTTGAAGGAACAAGAAGAAGCTTCAACCAAATCCACCATCGAAACCTCTCTCTCTTCCTCCGCCGTCGCCGCGATCCCTTCGCCACCGTCATCCACGTCATCTCCATCTCCGCCGGTAGTCGATTCCGCCGTAAATTTCCCTCCGCCTCCGGAAATCGCGTCGAGCTCCGTGGCCGTTAGTCTGGTTCAACCGAACCGGTGCGCGACGTGCCGAAAGCGCGTGGGGTTAACCGGTTTCAAGTGCAGGTGTGGGGTCACGTTTTGTGGGGCCCACAGGTATCCAGAGAGACACGCGTGCAGCTACGATTTTAAGACGGTGGGGAGAGAGGAGATAGCACGTGCGAACCCTTTGATTAGAGCGGAGAAGCTTCAGAGGATTTGA 501 0.5509 MAEEHPCQAPEGHRLCANNCGFFGSLATMNLCSKCYGEIRLKEQEEASTKSTIETSLSSSAVAAIPSPPSSTSSPSPPVVDSAVNFPPPPEIASSSVAVSLVQPNRCATCRKRVGLTGFKCRCGVTFCGAHRYPERHACSYDFKTVGREEIARANPLIRAEKLQRI* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00885 166 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Rops6g00885 166 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Rops6g00885 166 Pfam AN1-like Zinc finger 107 143 IPR000058 GO:0008270
Rops6g00885 166 SUPERFAMILY AN1-like Zinc finger 99 161 IPR035896 -
Rops6g00885 166 FunFam Zinc finger AN1-type containing 6 86 162 - -
Rops6g00885 166 MobiDBLite consensus disorder prediction 50 69 - -
Rops6g00885 166 SMART AN1_Zf_4 107 144 IPR000058 GO:0008270
Rops6g00885 166 ProSiteProfiles Zinc finger AN1-type profile. 101 147 IPR000058 GO:0008270
Rops6g00885 166 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Rops6g00885 166 MobiDBLite consensus disorder prediction 46 83 - -
Rops6g00885 166 Gene3D - 87 162 IPR035896 -
Rops6g00885 166 Gene3D - 1 63 - -
Rops6g00885 166 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 166 - -
Rops6g00885 166 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00885 Rops-Chr6 21952016 21952516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00885 1 166 C2H2 Transcription Factor Family AT3G52800 54.118 9.23e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00885 - - gmx:100813749 238.424