Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00877 ATGGTGGTGGTGGAATCAGAGATGAACTCCCAAGGTGAGATGGAATCAGAACAAGAAGCAAACATGAACCATCCATTGTCACCACTTGGAAGACAATCCTCAATATACTCCCTCACCCTTGATGAGTTCCAACACACTCTTTGTGAGAGTGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTTCTCTGTAGCATTTGGAGTGCAGAAGAGAATCAAAACCAAGCCATAATAAACTCCAACCACAACAACAATAACAACTTGTGTTCGATGATGATAAGGAAGCAACCAAGTCTTCCACGACAAGGGTCTCTAACAATTCCTGCACCTTTGTGTAGGAAAACAGTGGATGAAATTTGGTCTGAGATACACAAAGGAAAACAACAATCTCAGCAGCATCAAAACATTAACAACAACAACAATGGTGTCAATGGTCAAAATACCGAGTCTGCCCTTCGTCAAGCTACTTTTGGGGAGATGACATTGGAGGATTTTTTGGTCAAAGCCGGGGTAGTTAGGGAACCAGGTGCAATTGCAAATGCTAATGCTAATGCAGTTGCAATGCATGTTCATGCTTCTTCTTCTTCACATCGTCAAGACTATGGTATGTACCCAAATAACAATAACCTTGCTACGGTGGGCCCCTCCTTTGTGATGGGAGGGAATGTGGTGGCGCCGCCTTATCAGGGTGGTGGTGCAATTGGGGAGACTAAAAGGGATGGTGGTGGGTATCCTCCGCCGGGGGTTTGCTTTGGAGGAGGGGGTGGTTATGGGGCGGCGCCGGTGAGTCCGGTTTCACCGGATATAGTTACTGGTGAAAACTGTGGTGGTGGTCAATTTGGGATGGAGATGGGTGTGTTGAGAGGGAGAAAGAGGGTGTTGGATAGTCCTGTTGAAAAGGTGGTGGAGAGAAGACAGAGGAGGATGATCAAGAACAGAGAATCAGCTGCAAGATCAAGAGCCAGAAAACAGGCATACACAGTTGAACTGGAAGCAGAATTGAACCAATTAAAAGAAGAGAATGCTCAACTTAAACTAGCTCTGACCGAGCTTGAGAGGAGAAGAAAACAACAGTATTTAGTGGAAGCAAATGGGAGAGTTCAAACAAACTTTCAGAAGGCCAGAAAGAAATTGAGATCATTGAGAAGGAACCTAAGTTGCGCTTTATGA 1170 0.453 MVVVESEMNSQGEMESEQEANMNHPLSPLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLCSIWSAEENQNQAIINSNHNNNNNLCSMMIRKQPSLPRQGSLTIPAPLCRKTVDEIWSEIHKGKQQSQQHQNINNNNNGVNGQNTESALRQATFGEMTLEDFLVKAGVVREPGAIANANANAVAMHVHASSSSHRQDYGMYPNNNNLATVGPSFVMGGNVVAPPYQGGGAIGETKRDGGGYPPPGVCFGGGGGYGAAPVSPVSPDIVTGENCGGGQFGMEMGVLRGRKRVLDSPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKLALTELERRRKQQYLVEANGRVQTNFQKARKKLRSLRRNLSCAL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00877 389 MobiDBLite consensus disorder prediction 9 28 - -
Rops6g00877 389 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 302 354 IPR004827 GO:0003700|GO:0006355
Rops6g00877 389 MobiDBLite consensus disorder prediction 126 147 - -
Rops6g00877 389 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 307 322 IPR004827 GO:0003700|GO:0006355
Rops6g00877 389 Gene3D - 302 353 - -
Rops6g00877 389 CDD bZIP_plant_BZIP46 304 358 - -
Rops6g00877 389 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 302 358 - -
Rops6g00877 389 Coils Coil 320 357 - -
Rops6g00877 389 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 358 IPR043452 GO:0003700|GO:0045893
Rops6g00877 389 Pfam bZIP transcription factor 304 354 IPR004827 GO:0003700|GO:0006355
Rops6g00877 389 SMART brlzneu 300 366 IPR004827 GO:0003700|GO:0006355
Rops6g00877 389 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g00877 389 Coils Coil 364 384 - -
Rops6g00877 389 SUPERFAMILY Leucine zipper domain 304 354 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00877 Rops-Chr6 21782594 21788512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00877 1 358 bZIP Transcription Factor Family AT2G36270 49.764 1.04e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops6g00877 bZIP_1 9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00877 K14432 - gmx:100790948 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03479 8 74213888 74216921 Rops6g00877 6 21782594 21788512 PCT