Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00866 ATGCCAATCTCATCATCCATTCTTCTAAAGCCTCATTCTCTTCAATTCCAATCCCAATCACAATTCCAATTCAAATTCAAATTCAAACACCACCACCACAACACTCCAAAGCACGTTTCCTTAAGAATACAAAACTCCACCAGAACCCACCAAACCCTTCACTTTCTGAAACCCTACCTTGTGTCACAGCACAAGCCAATCCTCTGTGGTTGGCTTTGTAGCGCTATCTCCGTTTACTCACTCTCGAACCTTCTTTCTAAATTCTCTGTTATAACTACCTCCACCGCCATCGACGCCGCACAGGGCTTCGCCCTCGGTGGTTTGGTACTAGCTCGATTGATCGCCGCTTATGCTCAGCATGCGCTTCTCTGGGAAGCTTCCCTCAACGCCGTTTACAACCTTCGAGTTCATGTTTTTGATGCTGTTCTCCGTAGGGAACTTGCGTATTTCGAAGCCAACGACGCCGTTTCGGCTGGTGACATAGCGTATCGAATTACCGCTGAAGCTTCCGATCTTGCCCTTACCTTATATGCTCTTCTTAATACCATAGTACCCAGTACTCTGCAGGTGTCGGCAATGATAGTGCAGATGTTGGCTATAAGTCCCGTCCTTTCTTTGATTTCAGCCATTGCTATTCCTTGCATGGTGCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAGAGTCACATCTTAGCGTTGCTGCTCTCTCAGCATATCTAAATGAGATGCTGCCTGCAATCCTCTTTGTGAAAGCAAACAATGCAGAGCTGTGTGAGAGTGTCAGGTTTAAGAGACTGGCTCAGAGGGACTATTCTGCAAAGCTGAACAAGAAAAGGATGAAAGCACTCATTCCCCAGGTTATACAAGCTATTTATTTTGGGGTCCTTTCCATACTTTGCGCTGGTTCACTGGTGATTTCAAGAGGTTCATTTGATCGCTATAGCTTGGTTTCATTCATGACATCATTGCTTTTCTTGATTGGGCCAATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAAGGAGAACCTGCTGTTGAACGCTTGTTTGCTATGACCAGATTCAAAAATAAGGTGGTTGAGAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTAAGTATAATGATGGCATGCCACTTGTTTTAAATGGATTGAATCTTCACATTAGGACTGGAGAGATAGTTGCTATCGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTCTATATTGATTGATAACCATAACATCCAAAACATTCGCTTGCAAAGTTTAAGAAGACATGTTGGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTGAAGCGTGTAGCTAAAACTGCCCATGCAGACGAGTTTATTAGAAAACTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACATCTGCCTTAGATAGTAAATCTGAGTTACTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAGTGCTTGTGATCTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTCCTTTTGGATAATGGGAAATTAGAAGAGCTGCCTCGTTCAACTATGTTGAATGGACACATGGATTCATTGCTATCATCTGGGCTTGTTATTTGA 1857 0.4281 MPISSSILLKPHSLQFQSQSQFQFKFKFKHHHHNTPKHVSLRIQNSTRTHQTLHFLKPYLVSQHKPILCGWLCSAISVYSLSNLLSKFSVITTSTAIDAAQGFALGGLVLARLIAAYAQHALLWEASLNAVYNLRVHVFDAVLRRELAYFEANDAVSAGDIAYRITAEASDLALTLYALLNTIVPSTLQVSAMIVQMLAISPVLSLISAIAIPCMVLVVAFLGQELRKISKESHLSVAALSAYLNEMLPAILFVKANNAELCESVRFKRLAQRDYSAKLNKKRMKALIPQVIQAIYFGVLSILCAGSLVISRGSFDRYSLVSFMTSLLFLIGPIQDVGKAYNEWRQGEPAVERLFAMTRFKNKVVEKPDAVDLDHVTGDLKFCDVSFKYNDGMPLVLNGLNLHIRTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGSILIDNHNIQNIRLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKRVAKTAHADEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFLLDNGKLEELPRSTMLNGHMDSLLSSGLVI* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00866 618 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Rops6g00866 618 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 617 IPR003439 GO:0005524
Rops6g00866 618 SMART AAA_5 406 594 IPR003593 GO:0016887
Rops6g00866 618 FunFam ABC transporter ATP-binding protein 373 614 - -
Rops6g00866 618 SUPERFAMILY ABC transporter transmembrane region 56 358 IPR036640 GO:0005524|GO:0016020
Rops6g00866 618 Gene3D - 370 614 IPR027417 -
Rops6g00866 618 Gene3D ABC transporter type 1, transmembrane domain 50 359 IPR036640 GO:0005524|GO:0016020
Rops6g00866 618 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g00866 618 FunFam ABC transporter related 54 360 - -
Rops6g00866 618 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 102 597 IPR039421 -
Rops6g00866 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 598 IPR027417 -
Rops6g00866 618 Pfam ABC transporter 397 548 IPR003439 GO:0005524
Rops6g00866 618 CDD ABC_6TM_exporters 102 354 - -
Rops6g00866 618 Pfam ABC transporter transmembrane region 80 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00866 Rops-Chr6 21610671 21617730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00866 134 615 Calmodulin-binding Proteins AT2G36910 31.187 3.40e-56 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00866 K02021 - gmx:100788075 916.376