Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00853 ATGCAGATATTCGTGAAAACCCTAACAGGGAAGACCATAACCCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCCGATCAGCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAAGATGGAAGAACCTTAGCTGATTACAACATTCAAAAGGAATCGACACTTCATCTCGTGCTTAGACTTCGTGGGGGTATTATAGAGCCTTCGTTGATGGCTTTGGCTCGAAAATACAATCAGGACAAGACTATTTGCCGCAAATGCTATGCCCGTCTGCATCCAAGGGCTGTAAACTGCCGAAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 387 0.4625 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKTICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00853 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Rops6g00853 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Rops6g00853 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Rops6g00853 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Rops6g00853 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Rops6g00853 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Rops6g00853 128 Gene3D - 80 128 IPR038587 -
Rops6g00853 128 FunFam Ubiquitin-60S ribosomal L40 fusion 1 78 - -
Rops6g00853 128 FunFam ubiquitin-60S ribosomal protein L40 79 128 - -
Rops6g00853 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Rops6g00853 128 PANTHER UBIQUITIN 1 90 - -
Rops6g00853 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Rops6g00853 128 CDD Ubl_ubiquitin 1 76 - -
Rops6g00853 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Rops6g00853 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Rops6g00853 128 Gene3D - 1 79 - -
Rops6g00853 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00853 Rops-Chr6 21488042 21489675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00853 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.438 8.68e-92 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00853 K02927 - cave:132167306 259.225