Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00838 ATGACAGATAATGTAAAGGTATTAATAAATAAGTCCAAGTCTGTTCCAATTTCCTATGAGCGGAACCCAACATCTATAGATGTCACTTTGTCTAATGTTGGCTACGTAAAAATCAAATCTAGAGAAGATAAAATGGGAGAGATAATGAAAAGCCTGGAAGATTCTACAGTGAGAATGATTGGAGTGCATGGACCAAGTGGTGTGGGTAAGAGCACCTTAATCAAAGAAATTGCTAAGAAAGCTCGAGACAAGAAGTTGTTTAATGTGGTAGTTATAGTAGATATCACAAAAAATCCCAACCCACAAAAAATCCAAGAAGAAATTGCTTATGTGTTAGGATTAAGACTGGAAGGGGAAGGTGAGATTGTAAGAGCAGATCGTCTTAGGAGGAGGTTAAAGAAAGAAAAGGAGAACACCCTTGTAATCCTAGATGACCTCTGGGATAGATTGGACTTGAATAAGATAGGGATTCCATTTGATGATGATGGTGATGATGATGATTTAAGTCATATGACAATCAAAGATATAAAGGATCCTAACTTCCAAATGGTGAAAAAAGAAAAATCTCTTGGTGATTATAAGGGGTGCAAAATTTTGCTAACTTCCAGAGATAGAAAAGTATTATCTGATAAAATGGATGTTAAGTCAATTTTCAATGTGAGGGAATTAGATGACAAGGATGCTTTGATGTTGTTTAAGAAGGTGGTTGGAATACCTGATGAAATGTCCAATTTTAAACAAGAGATTGTTAAGACGTACTGTTCCGGGTTACCCATGGCAATAGTTACAGTTGGAAGGGCTTTAAGAAATAAGAGCGAGTCAGTGTGGGAAGCTACACTAGAAAAACTTAAAAAAGAAGAATTGATTGGAGTGCAGATTTCTGTAAAGATGAGTTATGACGATCTAGAAAGTGAGGAGCTCAAGTCCATTTTCTTACTTTGTGCTCAAATGGGTCATCAACCATTAATTATGGACTTGGTGAAGTATTGCTTTGGTCTAGGTATACTTGAAGGGGTCTATACGTTAAGGGAAGCTCAAGATAGAATATATACATCAATTCAAAAGCTAAAAGACTCGAGTTTGATGTTGGATGGAAGCTCCAGTGGTCGTTTCAGTATGCATGATATGGTTCGAGATGTTGCTTTATCTATAGCACATAAAGAGAAAAATGTATTTGCTTTGAGAAATGGAAAACTAGATGACTGGCCCGATAAGGATGAATTGGAGAGGTGCACCACTATTTCTATATGCAACAGTGATATCATTGATGAGCTTCCTAAAGTTATAAATTGTCCTCAGCTTAAATTCTTTCAAATTGACAGTGATGATCTATCTTTGAAAATACCTGAGAACGTTTTTGAAGGAATGGAAAAACTCAGAGTATTGATATTGACTGGTTTCCATTTACCATCTTTACCATCTTCAATTAAATGCCTATTAAACCTTAGAATGCTTTGTTTGGAGCAGTGCATACTAGTTGATAACTTATCTATCATAGGAGAGCTAAGAAAAATAAGAATTCTCAGCTTTTCTGGATCTCAAATTGAAAATTTGCCAACAGAGTTAGGGTGTTTGGATAAGCTACAATTATTTGATATTAGCGATTGTTCCATAGTGAAGGGGGTTCCTCCTAATTTTATATCAATGTTGACTTGTTTGGAAGAGTTGTATATAAGAAAGAGCTTAATTAAAATGAAGGTGGACAAAGAGACAAACCAAAGTCTATTTTCATTTCTTTCTCAGCTAAAGCATTTGCACAAATTGAAGGTTGTGGACTTGTGCATTCCATGTGCTGCAGTTTTGCCTAGGGACTTGTTCTTTGATAGGTTAAATGATTACAAGATTGTGATTGGAGACTTCAAGATACTTTCAGTGGGAGATTTTAGGATGCCCAGTAAGTATGAAGCATTAAGATCTTTGGCATTGCAGCTGAAAGATGGCACTGACATTCACTCACAAAAAGGGATAAAGTTGTTGTTCAAAAGAGTTGAAAATTTATTGTTGGGTGAGCTAAATGGTGTTCAAAATGCTTTTTATGAGTTGAATTTGGATGGATTTCCAGATCTGAAACACTTATCCATCATAAATAACATTGGCATTGAATATATCATTAACTCAATGGAGTTGTCACATCCTCAGAATGCTTTTCCCAATTTGGAATCTCTATGCCTTCACAAACTGATGAGCATGAAGAGGATATGTTATAGTCCAATTACAGTTACAGAGGCTTCATTCACTAAATTAAAAACCATCAAGGTCAAGATGTGTACCCAGTTGAAGAATCTCTTCTCCTTTTACTTGGTTAAATTTGTTGCGAGTCTAGAAACAATTGATGTTTCTGAATGTGATTCTTTGGAGGGGATTGTTGTTAAGGAAGGACAGGCAAATTTTGATAAGATTGAGTTTCATAAGTTACGCTCTTTGACACTACAATCATTACCCTCATTTACTAGTTTTTATGCCAATGCTAAGATGATAGAAGTGCAAACAACAAATAGGGATCTCATGGAAATTACTATTGCAGAAGACGAGCACAGTGTCTTTAGTGAACTGGTTAAAATTCCAAACTTAGAGAGCCTAAAGTTATCCTCAATCAACAGTCATAAGATATGGAGCGATCAGCCTTTATCAAGTTCTTGCTTTCAAAATTTAATAAAATTAGAATTGAAAGATTGCTATAAATTGAGATACTTATGTTCATTGTCCATGGCTAGCAGTTTGAATAAATTGAAAGGCCTTTCTATAAGCAACTGTGGGATGATGGAGAAGATTTTTGACATCGAAGGAAACGATGTGGACAAGGTCTGTATCTTTCCTAAATTAGAGGAAATCCACCTCACCAAACTGAATAAGTTGACAGACATATGGCAAACTAAAGTGGGTGCTGATTCCTTTTCTAGTCTCATTTTTGTGCAAATTGAAGGGTGCGAAAAACTAGACAAGATTTTCCCAAGTCACATGACAGGTTGGTTTGGGAGTTTAGACAGTTTGAAGGTTGTTGATTGCGTGTCAGTGGAAGTGATTTTTGAAATCCAAGATTCTAAGCAAAAAGATGCATCTAGGATGAACACAAAACTACAACTTATTCTTTTAGACCAACTCCCAAACCTGAAGCAAGTATGGGACAGAGATCCAGGAGAAATTCTTAACTTCAAAAATCTGCGAGGTATAGAGGTTAATAGGTGTGATAAACTAAGCTATGTCTTACCAACTTCGGTGGCCAAAGATCTTGAATTGCTGGAAAGCATTTCAGTAAAGCTTTGTCATGGAATGGAGGAAATTGTTGGCGGGAAAGATGGATCAGGAAAAACATTAGTGTTTCCTGAAGTAACCTACATGGAACTATATGGCCTATCAAACATTAAACGTTTCTACCCGTGGGAACATACTATAGAGTGTCCAAAATTGAAGCATTTGGAAGTGGACTTTTGTGAGAAGCTGGAAATATTCACAACCGAAGCCACCAATGTAGAAAAACAACCAGTTTTCTCAGCTGAAAAGGTAATCTCCAATTTGGAGTATATGGAAATTGGCTTAAAGGAAGCTAGCTGGTTACAGAGCAACATTGGGAAGTACCGAATGCACCGTTTGAAAGAGCTTACCTTGCGCTCATTAGGGAGTATTCAACTTCTCTACCTGTTTCTGCACAAAATGCCTAATCTAGAAAGGTTAAACTTGATTTTCTCTCACTATATGCTTGAAGATTTTGTGCCAAGTGAAAACATTGCAGCACAAGAAAGACTAGGAACCGTATTACAGCTTAAGGCATTGACTTTGTGGTCGTCAGAGATAAAGGATCTAGGATTTGAACGAGACCCAATTCTACAGAGACTAGAGCATTTGGTCTTATATGCCTGCCCTCATTTGATCAATTTAGCACCTTCCTCGCCAAAAGCATGGTTCAACTTGCAAAAATGA 3918 0.366 MTDNVKVLINKSKSVPISYERNPTSIDVTLSNVGYVKIKSREDKMGEIMKSLEDSTVRMIGVHGPSGVGKSTLIKEIAKKARDKKLFNVVVIVDITKNPNPQKIQEEIAYVLGLRLEGEGEIVRADRLRRRLKKEKENTLVILDDLWDRLDLNKIGIPFDDDGDDDDLSHMTIKDIKDPNFQMVKKEKSLGDYKGCKILLTSRDRKVLSDKMDVKSIFNVRELDDKDALMLFKKVVGIPDEMSNFKQEIVKTYCSGLPMAIVTVGRALRNKSESVWEATLEKLKKEELIGVQISVKMSYDDLESEELKSIFLLCAQMGHQPLIMDLVKYCFGLGILEGVYTLREAQDRIYTSIQKLKDSSLMLDGSSSGRFSMHDMVRDVALSIAHKEKNVFALRNGKLDDWPDKDELERCTTISICNSDIIDELPKVINCPQLKFFQIDSDDLSLKIPENVFEGMEKLRVLILTGFHLPSLPSSIKCLLNLRMLCLEQCILVDNLSIIGELRKIRILSFSGSQIENLPTELGCLDKLQLFDISDCSIVKGVPPNFISMLTCLEELYIRKSLIKMKVDKETNQSLFSFLSQLKHLHKLKVVDLCIPCAAVLPRDLFFDRLNDYKIVIGDFKILSVGDFRMPSKYEALRSLALQLKDGTDIHSQKGIKLLFKRVENLLLGELNGVQNAFYELNLDGFPDLKHLSIINNIGIEYIINSMELSHPQNAFPNLESLCLHKLMSMKRICYSPITVTEASFTKLKTIKVKMCTQLKNLFSFYLVKFVASLETIDVSECDSLEGIVVKEGQANFDKIEFHKLRSLTLQSLPSFTSFYANAKMIEVQTTNRDLMEITIAEDEHSVFSELVKIPNLESLKLSSINSHKIWSDQPLSSSCFQNLIKLELKDCYKLRYLCSLSMASSLNKLKGLSISNCGMMEKIFDIEGNDVDKVCIFPKLEEIHLTKLNKLTDIWQTKVGADSFSSLIFVQIEGCEKLDKIFPSHMTGWFGSLDSLKVVDCVSVEVIFEIQDSKQKDASRMNTKLQLILLDQLPNLKQVWDRDPGEILNFKNLRGIEVNRCDKLSYVLPTSVAKDLELLESISVKLCHGMEEIVGGKDGSGKTLVFPEVTYMELYGLSNIKRFYPWEHTIECPKLKHLEVDFCEKLEIFTTEATNVEKQPVFSAEKVISNLEYMEIGLKEASWLQSNIGKYRMHRLKELTLRSLGSIQLLYLFLHKMPNLERLNLIFSHYMLEDFVPSENIAAQERLGTVLQLKALTLWSSEIKDLGFERDPILQRLEHLVLYACPHLINLAPSSPKAWFNLQK* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00838 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 314 IPR027417 -
Rops6g00838 1305 Gene3D Ribonuclease Inhibitor 1029 1304 IPR032675 -
Rops6g00838 1305 Gene3D - 33 219 IPR027417 -
Rops6g00838 1305 Pfam NB-ARC domain 41 162 IPR002182 GO:0043531
Rops6g00838 1305 Pfam NB-ARC domain 194 302 IPR002182 GO:0043531
Rops6g00838 1305 SUPERFAMILY L domain-like 373 809 - -
Rops6g00838 1305 Gene3D Ribonuclease Inhibitor 573 795 IPR032675 -
Rops6g00838 1305 Gene3D Ribonuclease Inhibitor 381 572 IPR032675 -
Rops6g00838 1305 Gene3D - 222 303 IPR042197 -
Rops6g00838 1305 Gene3D Ribonuclease Inhibitor 796 1018 IPR032675 -
Rops6g00838 1305 PRINTS Disease resistance protein signature 133 147 - -
Rops6g00838 1305 PRINTS Disease resistance protein signature 59 74 - -
Rops6g00838 1305 PRINTS Disease resistance protein signature 769 785 - -
Rops6g00838 1305 PRINTS Disease resistance protein signature 254 268 - -
Rops6g00838 1305 SUPERFAMILY L domain-like 773 1294 - -
Rops6g00838 1305 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 994 1151 - -
Rops6g00838 1305 SMART AAA_5 56 228 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00838 Rops-Chr6 21271002 21280167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00838 57 388 WRKY Transcription Factor Family AT5G45050 27.299 5.35e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00838 - - psat:127076002 1886.69