Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00833 ATGTCCATAAACCAATACTACTCCGTGGACCTTCCAGAAACAACACTATGGTGGACTCAACAGCAACAACATCAACAACAACATCAACCCATCTTAGTGGAACCAATCCAAAACCCTTCCTCCACTTCAGGGCCACCCATTCACCCTTCTTGGCCCCTCCAACAACACCAACCCACATGGTTCAATTCACCTTCTCACTACCCCACTACCCGTTTCAATCTCAACAATCAAAACGACGGTGAACTAGAACAAGAAGAAGATGAAGAAGAAAAAGAAAACGACGATGACAACAACAATAAAAATAACGACCAAACCACCACCACCACAACACAACAAGGTGGAGGAGAAGAAAACGAGAAGGAACCAATGTTCGAGAAGCCACTAACACCCAGTGACGTGGGCAAGCTCAACCGTCTCGTAATCCCAAAGCAACACGCTGAAAAGTACTTCCCTTTGGGTTCGAGTGGTGACTCGGGCGAGTGCAAGGGGTTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGCGATTCCGTTACTCGTATTGGAACAGTAGCCAGAGTTACGTGTTAACCAAAGGTTGGAGCCGTTACGTGAAGGACAAGCGTCTAGACGCCGGCGACGTTGTTTTGTTCCAGCGCCACCGTGCTGACTCTCACCGTCTTTTCATAAACTGGAGGCGCCGGAACTCAAGTGGCACCACGCCAGCGCACGTAAGCAGGGTGGGTGGACACGGCAAGAGTAGTGGTGGGAACAGCAGCAATAGTAATAATAAGAATGAGGTTGGTGGTGGTGTGGGCATGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCATCATCATCACTCCTTGCCATACCAACATGACTGTCTTCATTCAGGTAGAGGGTCCCAAGTTCAGAACCAAAGGACGAGATCGGTGGGAAACAGTTCCAGTTCAAGTTCCAGTTCAAGGGTACTTAGGCTATTTGGGGTCAACATGGAATGCCAACCTGAACATGATTCTGGACCCTCCACACCCGCGTGCTCTTACAATAGTAACAATATGCCATCAACCCAGGACACAGATACCCACAATTTCTACCATCACCATCAAACTTCTCCTCATTCTTCCAATCCTCACCCTCACACGGTACGTCACCAACCATACTACTACTAG 1173 0.4885 MSINQYYSVDLPETTLWWTQQQQHQQQHQPILVEPIQNPSSTSGPPIHPSWPLQQHQPTWFNSPSHYPTTRFNLNNQNDGELEQEEDEEEKENDDDNNNKNNDQTTTTTTQQGGGEENEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGSSGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADSHRLFINWRRRNSSGTTPAHVSRVGGHGKSSGGNSSNSNNKNEVGGGVGMGWTRGFYSAHPYPTHHHHHSLPYQHDCLHSGRGSQVQNQRTRSVGNSSSSSSSSRVLRLFGVNMECQPEHDSGPSTPACSYNSNNMPSTQDTDTHNFYHHHQTSPHSSNPHPHTVRHQPYYY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00833 390 MobiDBLite consensus disorder prediction 246 262 - -
Rops6g00833 390 MobiDBLite consensus disorder prediction 298 326 - -
Rops6g00833 390 FunFam B3 domain-containing protein 117 239 - -
Rops6g00833 390 ProSiteProfiles B3 DNA-binding domain profile. 124 230 IPR003340 GO:0003677
Rops6g00833 390 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 76 349 IPR044800 GO:0003700
Rops6g00833 390 MobiDBLite consensus disorder prediction 282 390 - -
Rops6g00833 390 MobiDBLite consensus disorder prediction 337 361 - -
Rops6g00833 390 MobiDBLite consensus disorder prediction 35 79 - -
Rops6g00833 390 MobiDBLite consensus disorder prediction 232 263 - -
Rops6g00833 390 Pfam B3 DNA binding domain 124 230 IPR003340 GO:0003677
Rops6g00833 390 SUPERFAMILY DNA-binding pseudobarrel domain 119 229 IPR015300 -
Rops6g00833 390 CDD B3_DNA 122 220 IPR003340 GO:0003677
Rops6g00833 390 SMART B3_2 124 230 IPR003340 GO:0003677
Rops6g00833 390 MobiDBLite consensus disorder prediction 100 116 - -
Rops6g00833 390 Gene3D - 112 238 IPR015300 -
Rops6g00833 390 MobiDBLite consensus disorder prediction 35 132 - -
Rops6g00833 390 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00833 Rops-Chr6 21142540 21144747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00833 117 348 RAV Transcription Factor Family AT5G06250 50.628 3.74e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops6g00833 B3 5.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00833 K09287 - gmx:100818164 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00833 6 21142540 21144747 Rops6g00833 6 21142540 21144747 ECH
Rops8g03522 8 74884961 74886468 Rops6g00833 6 21142540 21144747 PCT