Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00824 ATGAAGTTTCTTTCTCTTCTCAAGAACACAAATGTAAGATCCTCTTCTTCATCATCATGGGCTTGGCCATCTTGTCACCAACCAAAAACCCTTTCTTTTAGAGCCAATAATGATGTCAAATTCAAAACCATTAACTCAACCTACTCAAACGCCAGTGTGTTGGAAAGCCCTGAATCCTTTTTCACTGAATCTCTTGAATCTGCCAGCTTCTCAACTGCTTCTGGTGATTCAATTGAGACAGTGATTCGTGGGTTGCGTTCTGATAGGCTTTTCTTTGAACCTGATGAGACAAGCTCCATTTTAGAGGCCAAAGCTTCTGGAAGCTTATTCAAAAACAGCGTGGTGCTTTCAATGGATTCATTGAACCCTTCTGTGGATTTCAGAAAGTCCATGGAGGAGATGGTGGAGGCTCATGGAGTGAAAAACTGGGAGGGTCTTGAGGAGCTTTTGGGTTTGTATTTGAAGTTTAATGTTAAAAGCAATCATGGGTATGTTGTGGATGCTTTTGTTGATTTATTGGTTGGTCTTGGATTGGCTCCTTCCCATTCCCATCCTCCTCCATCTAATGAAGAGGAGGTTGATGCTCCTAGTAATTAA 597 0.4154 MKFLSLLKNTNVRSSSSSSWAWPSCHQPKTLSFRANNDVKFKTINSTYSNASVLESPESFFTESLESASFSTASGDSIETVIRGLRSDRLFFEPDETSSILEAKASGSLFKNSVVLSMDSLNPSVDFRKSMEEMVEAHGVKNWEGLEELLGLYLKFNVKSNHGYVVDAFVDLLVGLGLAPSHSHPPPSNEEEVDAPSN* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00824 198 NCBIfam uncharacterized plant-specific domain TIGR01568 115 176 IPR006458 -
Rops6g00824 198 ProSiteProfiles OVATE domain profile. 116 175 IPR006458 -
Rops6g00824 198 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 44 176 IPR038933 GO:0045892
Rops6g00824 198 Pfam Transcriptional repressor, ovate 120 176 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00824 Rops-Chr6 21038096 21038692 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Rops6g00824 Ovate 6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00824 - - tcc:18598361 205.682