Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00820 ATGTCAGGCGGCGGTGGAGGTTCCGACCGCCGCGCTTCTCCGCCGCGAGAGGCTGCCGGAGCCCCGAAACGGGCGCCACTGAAGCGGCACCTGGCCTTCGCGTCGACGAAGCCGCCATTTGCTCCGCCGGATGATTACCACAATTTTTCCGCCTCGGACTCAAGAAGAGTAGCGGATCATGAGGTTGAAGCTGTTGTTGTTAGATCTCCGTTCATACAGCGGAAGAATGGAATGAATGACAACGAAGGAGACTCACAAAAGTGGAGTAACAGCCCTGGATACACCCACGTAATTAATAGTCCCTTCAAAACTCCTGTGTCTGCTAAAGGGGGAAGGACACATAGTAAGTCAAAGGTTTCCAAAGAAGGCAGATCATGTCCTCCGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTGGCAGCTGTCGCTATGATAGTTCCCTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGACCTAAACAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACTTCTGGTGAGGTTGATGGTGATATCTCTATCCTTAAGGCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAGATGAAAACAACCAGAAGTGCCTTTTTGTGACTGAAGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCTATCAAAGCTCCACATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGCGGAGATATAGAATCATTCTTAGAAGCACCATGGGTCCCATTGATGTCTACCTTATCAGTCAATTCGAAGAGAAATTTGAAGAGGCCAACGGTGCTGAGCCCCCCATGAGCTTCCCACTTGCTTCAAGTTCAGGGTCCAATGAGCAACTAGTGACAGAAATGGTTCCTGCTGAATGCAGTGGAAAAGGACTTGAACCTCAGGCTCAGCTCTCTTCTCAAGCATACCCTGATCTAAATGCTTCGCAAGAGTTTGCTGGGGGCATGATGAAGATCGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCCAGTGTTGATTGGAATGGGGTGGACATGCTTCATGCTGACTTTGGAATGATCTCAAGGCCACAAACTCCATCATCTGGGTTTCCGGAGGTGCCATCCACGGTAGCTAACTCTAATCAGAGGTGA 1407 0.4684 MSGGGGGSDRRASPPREAAGAPKRAPLKRHLAFASTKPPFAPPDDYHNFSASDSRRVADHEVEAVVVRSPFIQRKNGMNDNEGDSQKWSNSPGYTHVINSPFKTPVSAKGGRTHSKSKVSKEGRSCPPTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISILKAEVEKLSLEEQRLDDQIREMQERLRSLSEDENNQKCLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEANGAEPPMSFPLASSSGSNEQLVTEMVPAECSGKGLEPQAQLSSQAYPDLNASQEFAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSSVDWNGVDMLHADFGMISRPQTPSSGFPEVPSTVANSNQR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00820 468 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Rops6g00820 468 MobiDBLite consensus disorder prediction 126 142 - -
Rops6g00820 468 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Rops6g00820 468 Coils Coil 225 266 - -
Rops6g00820 468 FunFam E2F transcription factor 1 141 214 - -
Rops6g00820 468 MobiDBLite consensus disorder prediction 74 142 - -
Rops6g00820 468 CDD E2F_DD 225 329 IPR032198 GO:0046983
Rops6g00820 468 MobiDBLite consensus disorder prediction 1 53 - -
Rops6g00820 468 PANTHER TRANSCRIPTION FACTOR E2F 86 430 IPR015633 GO:0000978|GO:0006357
Rops6g00820 468 MobiDBLite consensus disorder prediction 74 102 - -
Rops6g00820 468 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Rops6g00820 468 Gene3D - 219 329 - -
Rops6g00820 468 Gene3D - 141 214 IPR036388 -
Rops6g00820 468 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Rops6g00820 468 MobiDBLite consensus disorder prediction 448 468 - -
Rops6g00820 468 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00820 Rops-Chr6 20946314 20951020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00820 21 468 E2F-DP Transcription Factor Family AT2G36010 57.294 2.04e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops6g00820 E2F_CC-MB 3.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00820 K06620 - gmx:100811762 789.645