Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00793 ATGAAGAGGCTTGTCATGGAAGAAGAAGCTTCTTCTCTGAAGCTCTTTTTCTTACTCTTTCTCTCACTTGTTTGTGTGGTTGTTTTTGCTGACACTGACCCAAATGATGTGAAGATTCTGAACCAATTCAGAAAAGGGTTGCAGAACCCAGAAGTGTTACCATGGCCAGAAGAAGGAGGAGACCCATGTGGGAATCCTCCATGGAAATACATCTTCTGTAATGGTGACAGAGTCTCTCAGATTCAAACAAAGAATTTGAGCCTTGTGGGTCCATTGCCTCAGAACTTCAACCAACTCACAATGCTTGAGAATCTAGGCCTTCAGAACAACAAGCTCAATGGTCCATTACCATCTTTCAAAGGCTTGAAGAATCTCAAGTATGCGTTTTTGAATTTCAATGAGTTTGAGTCCATCCCTGAAGATTTCTTTGAGGGGCTAGATAGTCTTGAGGTTTTGGCATTGGATTACAACAACAATCTCAATGCAACAAATGGAGGGTGGAGATTCCCCTCAACTTTGCAAGGTTCAGCACAATTGACCAACTTGTCTTGTATGAGTTGCAATTTGGTTGGTCCAATTCCTGATTTTCTTGGAAAGATGGTGTCTTTATCGGTTTTGCTACTTTCCGGCAACAATTTAACCGGCGAGATTCCGGCGACGTTTAAGGATATTCCGGCTTTGCAGGTTTTGTGGTTGAATAACCAACAGGGTGGTGGCATCACTGGTACTATTGATGTGGTTGCAACCATGGTTTCACTCACGAGTTTATGGCTTCATGGGAACCAGTTCAAAGGGAGTATTCCAATGAACATTGGGGATTTGACTTTTCTGAAGGATCTTGATCTAAATGGTAACCAGTTAGTTGGGCTTATCCCTGATGCTTTAGGTAAAATGAAATTGGACCGTTTAGATTTGAATAATAATCATTTCATGGGTCCAATTCCAAATTTTGCAGCAACTAAAGTCACTTTTGATTCCAATAATTTTTGTCAATCTAAACCTGGGGTTCTTTGTTCCTTTGAAGTCATGATGTTGCTGGAGTTTCTTGGTGGGTTGAATTATCCTTCAAATCTGGTTAATTCATGGAGTGGTAATAACCCATGTGATGGGCCATGGCTGGGAATAAAGTGCAATGGCAATGGAAAGGTGTCAATGATTATTTTGTCTAACTTTAATCTCAATGGTACTTTAAGTCCTTCTGTTGCAAACTTAGATTCTCTTGTTGAAATCAGGTTAGGGGGTAACAATCTAAGTGGTGAAATACCTAGCAACTGGACTAGTTTGAAATCCCTGACATTGTTGGATCTAAGTGGCAATAACATTTCCCCTCCCTTGCCAAATTTTAGCAAAAGCTTGAAACTTGTGATTGATGGGAATCCTCAGTTAGTTCATGGCAGCTCTGCAATTCCTCCATCAGGGACTGGTTTGTCATCTGGAAAGACTAGACCTTCTCCTGATAATCCATCAGCAGAGTCAAATTCCAATTCCAGTAATTCTCTTGAATCAAATCATCCCAAGAGGAAAAGCTTGGTTTCAATTGTAGCTCCTATTGCAGGTGTTGCAGCTGCAGCTTTTCTGCTCATTCCCCTTTATGTATATTGTTTCAGGAGGAGAAAGGTTGCCTCTGAGGGTTCAAGTTCACTGGTAATTCACCCTAAAGATCCATCTGATTCAGACAATGTTGTGAAGATTGTTGTTGCTAACAATAGCAATGGAATCATTTCCACAGTAACAGGCAGTGGATCTGGGAATCTAAATGGAAATGGGGAGTCTCATGTCATTGAAGCTGGAAATATTGTGATATCAGTTCAAGTTCTTCGAAATGTGACTAAGAATTTTGCGCCAGAGAATGAGCTTGGACGTGGTGGATTTGGAGTTGTTTACAAGGGAGAATTGGATGATGGCACTAAAATTGCGGTAAAACGAATGGAAGCTGGTGTGATTAGCAGCAAAGCCTTAGATGAATTCCAGTCTGAAATCGCAGTTTTATCAAAAGTCCGGCACCGCCATTTAGTGTCTCTTTTGGGGTATTCAATTCAAGGTAATGAGAGGCTTCTGGTTTATGAATATATGCCACAAGGGGCTCTCAGTCTGCATCTTTTCCATTGGAAAACTTTACAGCTGGAGCCCCTTTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTATGGCTCATCAGAGCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTTGGGGAGGACTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTGATGGCAAACAATCTGTAGCGACCAGGCTTGCTGGGACATTTGGATACTTGGCACCAGAATATGCAGTTACTGGAAAAATCACTACTAAAGCAGATGTTTTCAGTTTTGGTGTTGTGCTAATGGAACTGATAACTGGATTAATGGCACTTGATGAGAATCGACCCGAGGAAAGCCAATACTTGGCAGCATGGTTTTGGCATATAAGATCAGATAAGGAGAAACTAATGGCTGCTATTGACCCGGCCCTTGACATAAAGGAAGAAACATTTGATAGCATCTCCATCATTGCTGAATTAGCTGGGCACTGCACTGCCAGAGAACCATACCAACGGCCAGATATGGGCCATGCTGTGAATGTTCTAGCACCTCTTGTTGAAAAATGGAAACCTTTAGATGATGACACTGAGGAGTATTCTGGCATAGATTATAGTCTTCCCCTTAATCAAATGGTTAAGGACTGGCAGGAAACAGAAGGAAAGGACTTAAGCTATATGGATCTACAAGATAGCAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGAGTCTTTTACTTCTGCTGATGGCCGGTGA 2880 0.4149 MKRLVMEEEASSLKLFFLLFLSLVCVVVFADTDPNDVKILNQFRKGLQNPEVLPWPEEGGDPCGNPPWKYIFCNGDRVSQIQTKNLSLVGPLPQNFNQLTMLENLGLQNNKLNGPLPSFKGLKNLKYAFLNFNEFESIPEDFFEGLDSLEVLALDYNNNLNATNGGWRFPSTLQGSAQLTNLSCMSCNLVGPIPDFLGKMVSLSVLLLSGNNLTGEIPATFKDIPALQVLWLNNQQGGGITGTIDVVATMVSLTSLWLHGNQFKGSIPMNIGDLTFLKDLDLNGNQLVGLIPDALGKMKLDRLDLNNNHFMGPIPNFAATKVTFDSNNFCQSKPGVLCSFEVMMLLEFLGGLNYPSNLVNSWSGNNPCDGPWLGIKCNGNGKVSMIILSNFNLNGTLSPSVANLDSLVEIRLGGNNLSGEIPSNWTSLKSLTLLDLSGNNISPPLPNFSKSLKLVIDGNPQLVHGSSAIPPSGTGLSSGKTRPSPDNPSAESNSNSSNSLESNHPKRKSLVSIVAPIAGVAAAAFLLIPLYVYCFRRRKVASEGSSSLVIHPKDPSDSDNVVKIVVANNSNGIISTVTGSGSGNLNGNGESHVIEAGNIVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSIQGNERLLVYEYMPQGALSLHLFHWKTLQLEPLSWKRRLNIALDVARGMEYLHSMAHQSFIHRDLKSSNILLGEDFRAKVSDFGLVKLAPDGKQSVATRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELITGLMALDENRPEESQYLAAWFWHIRSDKEKLMAAIDPALDIKEETFDSISIIAELAGHCTAREPYQRPDMGHAVNVLAPLVEKWKPLDDDTEEYSGIDYSLPLNQMVKDWQETEGKDLSYMDLQDSKSSIPARPTGFAESFTSADGR* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00793 959 SUPERFAMILY L domain-like 341 452 - -
Rops6g00793 959 SMART serkin_6 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00793 959 ProSitePatterns Protein kinases ATP-binding region signature. 619 641 IPR017441 GO:0005524
Rops6g00793 959 Pfam Leucine rich repeat N-terminal domain 344 378 IPR013210 -
Rops6g00793 959 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Rops6g00793 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Rops6g00793 959 FunFam receptor protein kinase TMK1 575 690 - -
Rops6g00793 959 Pfam Protein tyrosine and serine/threonine kinase 616 886 IPR001245 GO:0004672|GO:0006468
Rops6g00793 959 Gene3D Ribonuclease Inhibitor 341 466 IPR032675 -
Rops6g00793 959 PANTHER OSJNBA0070M12.3 PROTEIN 16 959 - -
Rops6g00793 959 ProSiteProfiles Protein kinase domain profile. 613 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00793 959 CDD STKc_IRAK 619 892 - -
Rops6g00793 959 Gene3D Ribonuclease Inhibitor 33 337 IPR032675 -
Rops6g00793 959 MobiDBLite consensus disorder prediction 936 959 - -
Rops6g00793 959 SMART LRR_typ_2 122 145 IPR003591 -
Rops6g00793 959 SMART LRR_typ_2 274 297 IPR003591 -
Rops6g00793 959 SMART LRR_typ_2 200 223 IPR003591 -
Rops6g00793 959 SMART LRR_typ_2 428 450 IPR003591 -
Rops6g00793 959 Gene3D Phosphorylase Kinase; domain 1 582 690 - -
Rops6g00793 959 SUPERFAMILY Protein kinase-like (PK-like) 591 897 IPR011009 -
Rops6g00793 959 FunFam Receptor-like kinase TMK4 34 335 - -
Rops6g00793 959 Gene3D Transferase(Phosphotransferase) domain 1 691 909 - -
Rops6g00793 959 MobiDBLite consensus disorder prediction 466 504 - -
Rops6g00793 959 FunFam receptor protein kinase TMK1 691 908 - -
Rops6g00793 959 SUPERFAMILY L domain-like 32 317 - -
Rops6g00793 959 FunFam Leucine-rich repeat receptor-like kinase 340 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00793 Rops-Chr6 20145883 20149731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00793 66 926 Receptor kinase-like Gene Family AT1G55610 29.501 2.34e-85 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops6g00793 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00793 - - gmx:100781857 1457.2