Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00788 ATGGCGACGTACTTTCATAGTAACTCAGAAATCCAAGGTGGTGCTGATGGCCTTCAAACTCTTATACTCATGAACCCTGGTTACATTCAATACTCAGACACACATCCACCACCACCGCAACAACATGGAGGAAACCTCATATTCCTCAACTCAGTCGCCGGCAACAACTCCCTCGCCCCACAAAATCTCCCTCACGCGCCGCCACAACTTGTTGGTGTCCCACTCTCCTCCGCCTCAGTAGAACCATCGGGAAACACCCATCACGACGTCTCCGCCTTGCATGGCTTCCCGCCACGCATGCAGTACAATCTCTGGAACACGATGGACCCCAACACAGCGGCGCGTGAGGCGTCACGCGCCAATCAAGGGTTGTCTTTGAGTCTCCATGCTCAGGCTCCTGCTATGTCCGGCGATGAGGCGCGTATGTCGGGTAGGTCTTCATCTTCAGCTTCTGGTGTTACCAATGGCTTTTCCGGGATTCAGAGTGTGCTATTGAGTTCCAAGTATTTGAAGGCGACGCAGGAAATACTAGATGAGGTTGTTAATGTTAACAGTGGAATTAAGGTTGAAACTGCTAAGAAGATCTTTGATAAGACTAAGATTGTTGAGGAATCATCAACTGCAGTTAGTGGAGATGGTTCAATTGGTGGAGAGGGAAGTGGGAAGCGCAGCTCTGAGTTATCAACCACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATTAGCATGATTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGATTTCCTCATTTGAACAAGCTGCGGGGATTGGTTCAGCAAGAACTTACACTGCACTTGCATTGCAAACAATCTCCAAGCAGTTTCGGTGCTTGAAAGATGCTGTTATGGGACAAATTAGAGCTGCAAATAAGTGCTTAGGAGAAGAGGATTGTTTTGGTGGTAAAATTGAAGGGTCAAGGCTCAAATATGTAGACCATCACTTAAGGCAACAGAGAGCTATTCAACAATTGGGAATGATGCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAAAGATCAGTTTCTGTCCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTAGAGTTCGGCTTTGGAAGCCAATGGTGGAAGAAATGTACTTGGAGGAGATGAAGGAGCATGAACTGAATGGTTCAGAGGACAAATCAAGCAAGAGTGGTGAAGACCCTGTTATGAAAACAGAAACTCCACAAGAGAGAGGTCCTACCTCTGACATTGAATCTAAAAGTTTCATTTCCAAACAAGATGTTGCTAACAACCAGAACACACCAATAGTTTCAGTTTCTACACCATCAACATCACCTGCTGGGGGTAATGTGAGAAACCAATCAGGATTCAGCTTCATTGGGTCATCAGAACTAGATGGAATCACACAAGGAAGTCCCAAGAAAACAAGGAACCATGAAATTCTGCAGTCTCCAAACATGGATGTCAAACCCAATGAACAACTCTCAATGAAATTTGGTGATGACAGGGAAAGCAGAGATGGCTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATGGAGGAAATTGGTAGGTTTGATACAGAGCAATTCACACCAAGGTTTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACACTATATCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAACTAGGAAGAAGAGTGGACATAAGTGAACCAAACCAGTTTGGTGCCATAAACACTTCCACTGCTCGCTCTTCAGCTGTATTTGAGAGCATCAACATGCAGAACCCAAAGAGGTTTGCTACACAACTGTTGTCGGACTTTGTGACCTAA 1974 0.4534 MATYFHSNSEIQGGADGLQTLILMNPGYIQYSDTHPPPPQQHGGNLIFLNSVAGNNSLAPQNLPHAPPQLVGVPLSSASVEPSGNTHHDVSALHGFPPRMQYNLWNTMDPNTAAREASRANQGLSLSLHAQAPAMSGDEARMSGRSSSSASGVTNGFSGIQSVLLSSKYLKATQEILDEVVNVNSGIKVETAKKIFDKTKIVEESSTAVSGDGSIGGEGSGKRSSELSTTERQEIQMKKAKLISMIDEVEQRYRQYHNQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAVMGQIRAANKCLGEEDCFGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEDKSSKSGEDPVMKTETPQERGPTSDIESKSFISKQDVANNQNTPIVSVSTPSTSPAGGNVRNQSGFSFIGSSELDGITQGSPKKTRNHEILQSPNMDVKPNEQLSMKFGDDRESRDGYSFMGNQTNFIGGFGQYPMEEIGRFDTEQFTPRFSGNGVSLTLGLPHCDTISGTHQTFLPNQNIQLGRRVDISEPNQFGAINTSTARSSAVFESINMQNPKRFATQLLSDFVT* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00788 657 MobiDBLite consensus disorder prediction 207 231 - -
Rops6g00788 657 MobiDBLite consensus disorder prediction 132 152 - -
Rops6g00788 657 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Rops6g00788 657 MobiDBLite consensus disorder prediction 420 442 - -
Rops6g00788 657 SMART prehox3 158 300 IPR006563 -
Rops6g00788 657 FunFam BEL1-like homeodomain protein 9 351 413 - -
Rops6g00788 657 Pfam Associated with HOX 163 298 IPR006563 -
Rops6g00788 657 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Rops6g00788 657 CDD homeodomain 348 409 IPR001356 GO:0003677
Rops6g00788 657 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 431 - -
Rops6g00788 657 MobiDBLite consensus disorder prediction 444 487 - -
Rops6g00788 657 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Rops6g00788 657 SMART HOX_1 348 412 IPR001356 GO:0003677
Rops6g00788 657 Gene3D - 343 421 - -
Rops6g00788 657 Coils Coil 232 259 - -
Rops6g00788 657 MobiDBLite consensus disorder prediction 420 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00788 Rops-Chr6 20036876 20041224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00788 1 657 Homeobox Transcription Factor Family AT2G35940 48.922 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops6g00788 POX 8.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00788 - - gmx:100810851 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00788 6 20036876 20041224 Rops6g00788 6 20036876 20041224 ECH
Rops8g03556 8 75563332 75567447 Rops6g00788 6 20036876 20041224 PCT