Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00787 ATGGATGAAATTGAAGTTCCTCAGTATTTTATATGCCCAATATCCCTTCAAATCATGAAGGATCCTGTTACTGCTATAACAGGTATCACATATGACAGAGATAGCATTGAGCATTGGCTATTCTCCAACAAGAACACTACATGCCCAGTTACCAACCAGCCTCTTCCAAGAGATTCTGATTTAACCCCTAATCATACTCTTCGCCGTTTGATCCAAGCTTGGTGCACTCAAAATGCTGCACTTGGCATTGATAGGATTCCAACACCAAAGCCACCACTTAACAAGATTCAAGTCCTCAAGCTTCTTAAAGACCTCAAAGACCCCAAGTTGCAGCACAAAAGTCTCATGCAATTGGAGTTGCTTGCAGCAGAGAATGAGAGGAATAGGAAGTGTTTGTTAGAGGCTGGTGTGCCAAAAGCCATGATCATGTTCATAATGGCTTGTCATAAAAAGGGTCAAATTGAAGAGGGTCTTGAAGAAGCTCTGAGTTTACTTCAGTTTGTTAAGGTTCATGCAGAGGAAGTGAGGCAGCTTCTAGAGGAAAACGATCAAAAAGTATTGGATTCTCTTACGTGGGTTTTGAGCTGTGAAATGAGAAACTCTGTTGCTGTGAAATCACATGCAGTTTTGTTGCTCAAAAGAATCATCCAAAAGGGTGAACCTTTTGTTCTGCAGAGACTAAAACCTGAATTCTTTGAAAGGATTGTGAAGATTTTAAGAAATGGGATTACCCAACAAGGGATAAGTGCTGCTCTTCAGGTCTTGTTAAGTGCTTGTCCTTGTGGAAGAAACAGGATCATGATGGTGGAAGCTGGTGCTGTTTTTGAACTTGTGGAGATTGAATTAGGAGCACCTGAGAAGAGAATCACAGAACTAACATTTGCTATTCTATTTCATCTTTGTTCTTGTGCCAATGGTAGAGCTCAGTTTCTGAGTCATGAAGGTTCCATTGCAGTGTTGACTGAGAGAATCTTGAAGGTTTCAGCAGCAGTGGATGACAGAGCCATATTTGTTCTCTCATTGATATCTAAATTCTCAGCCACAGAGATGGTGTTGCAAGAGATGTTAAGGGTTGGAACTGTGTCAAAGCTTTTCATGTTGCTTCAAGCTGATCATGCCAAATATCTAAAAGATAAAGCAAAGGAAATAATCAAGTCTCACTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTAGAACTTCTTCTTAG 1209 0.4053 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFSNKNTTCPVTNQPLPRDSDLTPNHTLRRLIQAWCTQNAALGIDRIPTPKPPLNKIQVLKLLKDLKDPKLQHKSLMQLELLAAENERNRKCLLEAGVPKAMIMFIMACHKKGQIEEGLEEALSLLQFVKVHAEEVRQLLEENDQKVLDSLTWVLSCEMRNSVAVKSHAVLLLKRIIQKGEPFVLQRLKPEFFERIVKILRNGITQQGISAALQVLLSACPCGRNRIMMVEAGAVFELVEIELGAPEKRITELTFAILFHLCSCANGRAQFLSHEGSIAVLTERILKVSAAVDDRAIFVLSLISKFSATEMVLQEMLRVGTVSKLFMLLQADHAKYLKDKAKEIIKSHSEVWKNSPCFPRTSS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00787 402 SUPERFAMILY ARM repeat 98 374 IPR016024 -
Rops6g00787 402 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Rops6g00787 402 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Rops6g00787 402 SUPERFAMILY RING/U-box 3 84 - -
Rops6g00787 402 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Rops6g00787 402 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Rops6g00787 402 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Rops6g00787 402 CDD RING-Ubox_WDSUB1-like 7 64 - -
Rops6g00787 402 Gene3D - 95 391 IPR011989 -
Rops6g00787 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00787 Rops-Chr6 19999474 20000682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00787 2 397 U-box Gene Family AT3G11840 42.500 4.38e-116 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00787 - - lja:Lj0g3v0014579.1 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00787 6 19999474 20000682 Rops6g00787 6 19999474 20000682 ECH
Rops8g03558 8 75601722 75603310 Rops6g00787 6 19999474 20000682 PCT