Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00786 ATGCAGAATATGGCAGCACCTAGAGGTAGACCACCACTTCATAGGAATGCTGGAGGAAGAGACATACCTCAACCTGACTCGACGTTGAATGCCATTCACATGATAGCACAATCGGTGAATGCCCAAGCTGTTGCAGCCAACCGGATGATGGATGAGCTACAAAGGCAAGACCGCCGGTCAACACCTGCGAACGTCAATCAACTACATCCACAATATCAAGGAATGAGCGAATTCCGAAAGAGTAACCCTCCAATTTTTAATGGAGGAACCAGTTTAGACATAGCTGAAAAATGGATTCAACAGATGGAGAAAATTTTTGGAACTATGCTTCATCCTTTAACATTCAGCTTCATATTGTTGAACCTCGATCATATAGACATGGATGAGATTGATGTTCCTCCATTCTTTCTCTGCCCCATTTCATTAGAAATCATGAAGGATCCAGTTACTGTCTCCACAGGCATCACCTATGATCGAGAGAGCATTGAGAAATGGCTCCTTTCGTCCAAAAACAACACATGTCCAGTTACCAAACAACCCCTTCTCTCAGATTGCACTGATCTCACTCCTAACCACACCCTTCGTAGATTGCTTCAAGCATGGTGCACCATGAACGCTTCTCATGGTGTTGAAAGGATTCCAACTCCTAAGCCACCAGTCAACAAAACCATGATACAGAAACTCCTCAAAGGCGCTTCTGATTCATCACAATTGCAGATCCAATGCCTTCAAAGACTCAAATCCATCGCATCTGAGAGTGAGACAAATAGACGCTGCATGGAAGCTTCTGGTGCTGTTGAGTTCTTAGCATCAGTTGTAACAAACAACACCAATGCTTCATCTTGCACAGATGATGATGCTATTGATGGGTTTGACTTGAAAACAGGTGCAGGAGATGAAGCATTAAGCATCCTCTTTAGTCTCCATTTATCAGAAGAGGGTCTGAAGACTCTTCTAGCTTTCAAAAATGGAGAATTTATGGACTCCTTGATGAGAATCATGCAAAGGGGAATCTATGAGTCGAGAACTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTTGCTAATCCTGCGCAGCTAGTAAATCTAAGAGGCGAATTTTTCATGGAATTAGTTCAAGTTCTGAAAGACCAGGTTTCACAGAAGGGTTCAAAAGCAACACTACAAACACTTATCCAACTTGTTCCTTGGGGGAGGAACAGGGTGAAAACAGTGGAAGCAGGAGCTGTTCCAGTTTTGATAGAACTCCTTCTTGATTGTAAGGACAGAAAGCCTTGTGAGATGATGTTGGTTCTTTTGGAGATGTTGTGTCAATGTGCAGATGGGCGTGCTGAGCTTCTGAGCCATGGAGCTGGATTAGCCATAGTTTCCAAGAAGATTCTGAGGGTTTCAATGATGGCAAATGATAGGGCTGCAAGGATTCTTCTATCAGTTTCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAAATGCTGCAATTGGGTGTGGTGGCAAAACTGTGTTTGGTGGTTCAAGTGGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGAGAGATTCTGAAATTGCATGCAAGGTCATGGAGGAATGCTCCTTGCATACCTCCCGATTCATACCCAACAACTGGGTGA 1632 0.4326 MQNMAAPRGRPPLHRNAGGRDIPQPDSTLNAIHMIAQSVNAQAVAANRMMDELQRQDRRSTPANVNQLHPQYQGMSEFRKSNPPIFNGGTSLDIAEKWIQQMEKIFGTMLHPLTFSFILLNLDHIDMDEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLLSSKNNTCPVTKQPLLSDCTDLTPNHTLRRLLQAWCTMNASHGVERIPTPKPPVNKTMIQKLLKGASDSSQLQIQCLQRLKSIASESETNRRCMEASGAVEFLASVVTNNTNASSCTDDDAIDGFDLKTGAGDEALSILFSLHLSEEGLKTLLAFKNGEFMDSLMRIMQRGIYESRTYAVFLLKSMSEVANPAQLVNLRGEFFMELVQVLKDQVSQKGSKATLQTLIQLVPWGRNRVKTVEAGAVPVLIELLLDCKDRKPCEMMLVLLEMLCQCADGRAELLSHGAGLAIVSKKILRVSMMANDRAARILLSVSRFSATPSVVQEMLQLGVVAKLCLVVQVDSGNKAKEKAREILKLHARSWRNAPCIPPDSYPTTG* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00786 543 MobiDBLite consensus disorder prediction 1 26 - -
Rops6g00786 543 CDD RING-Ubox_PUB 133 185 IPR045210 -
Rops6g00786 543 Gene3D - 217 530 IPR011989 -
Rops6g00786 543 SMART Ubox_2 135 201 IPR003613 GO:0004842|GO:0016567
Rops6g00786 543 SUPERFAMILY RING/U-box 119 208 - -
Rops6g00786 543 Pfam U-box domain 132 205 IPR003613 GO:0004842|GO:0016567
Rops6g00786 543 SUPERFAMILY ARM repeat 225 528 IPR016024 -
Rops6g00786 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 212 IPR013083 -
Rops6g00786 543 ProSiteProfiles U-box domain profile. 131 208 IPR003613 GO:0004842|GO:0016567
Rops6g00786 543 Coils Coil 36 56 - -
Rops6g00786 543 PANTHER WDSAM1 PROTEIN 129 535 IPR045185 GO:0061630
Rops6g00786 543 FunFam RING-type E3 ubiquitin transferase 126 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00786 Rops-Chr6 19941744 19949024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00786 129 540 U-box Gene Family AT3G52450 56.813 2.43e-173 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00786 - - gmx:100811258 625.165