Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00785 ATGAAGGATCCAGTTACTGTCTCCACAGGCATCACCTATGACCGAGAGAGCATTGAGAAATGGCTCTTTTCATCAAAAAACAACACATGTCCAGTTACCAAACAACCCCTTCTCTCAGATTGCACTGATCTCACTCCAAACCACACCCTTCGTAGATTGCTTCAAGCATGGTGCACCATGAACGCTTCTCATGGTGTTGAGAGGATTCCAACTCCTAAGCCACCAGTCAACAAAACCATGATACAGAAACTCCTCAAGGACGCTTCTGAATCTTCTCAGTTGCAGATCCAGTGTCTCCAAAGACTCAAATCCATCGCTTCTGAGAGTGAGACAAATAGACGCTGCATGGAAGCTTCTGGTGCTGTTGAGTTCTTAGCATCAGTTGTAACCAGCAACACCAAAGCTTCACTTTCCGCAGATGATGATGATATTTATGGGTTTGACTTGAAAACAGGTGCAGGAGATGAAGCTTTAAGCATCCTCTTTAGTGTCCATTTATCAGAAGAGGGACTGAAGACTCTCTTAGCCTTCAAAAATGGAGAATTTATGGACTCCTTGATGAGAATCATGCAAAGGGGAATCTATGAGTCGAGAACTTACGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTTGCTAATCCTGCGCAGCTAGTAAATCTAAGAGGCGAATTTTTCATGGAACTAGTTCAAGTTCTGAAAGACCAGGTTTCACAGAAGGCTTCAAAAGCAACACTGCAGACACTAATCGAACTTGTTCCTTGGGGAAGGAACAGGGTGAAAACAGTTGAAGCAGGAGCTGTTCCTGTTTTGATAGAACTCCTTCTTGATTGTAAGGACAGAAAGCCTTGTGAGATGATGTTGGTTCTTTTGGAGATGTTGTGTCAATGTGCAGATGGGCGTGCTGAGCTTCTGAGCCATGGAGCTGGATTAGCCATAGTTTCCAAGAAAATTATGAGGGTTTCAATGATGGCAAATGATAGGGCTGCAAGGATTCTTTTATCAGTTTCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAAATGCTGCAATTGGGTGTGGTGGCAAAACTGTGTTTGGTACTTCAAGTGGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGAGAGATACTGAAATTGCATGCAAGGGCATGGAGGAATTCTCCTTGCATACCACCCAATTTGCTTGCTTAA 1191 0.4316 MKDPVTVSTGITYDRESIEKWLFSSKNNTCPVTKQPLLSDCTDLTPNHTLRRLLQAWCTMNASHGVERIPTPKPPVNKTMIQKLLKDASESSQLQIQCLQRLKSIASESETNRRCMEASGAVEFLASVVTSNTKASLSADDDDIYGFDLKTGAGDEALSILFSVHLSEEGLKTLLAFKNGEFMDSLMRIMQRGIYESRTYAVFLLKSMSEVANPAQLVNLRGEFFMELVQVLKDQVSQKASKATLQTLIELVPWGRNRVKTVEAGAVPVLIELLLDCKDRKPCEMMLVLLEMLCQCADGRAELLSHGAGLAIVSKKIMRVSMMANDRAARILLSVSRFSATPSVVQEMLQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPPNLLA* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00785 396 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Rops6g00785 396 SUPERFAMILY ARM repeat 81 385 IPR016024 -
Rops6g00785 396 Gene3D - 77 386 IPR011989 -
Rops6g00785 396 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Rops6g00785 396 Pfam U-box domain 1 61 IPR003613 GO:0004842|GO:0016567
Rops6g00785 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Rops6g00785 396 SUPERFAMILY RING/U-box 1 64 - -
Rops6g00785 396 CDD RING-Ubox_PUB 1 41 IPR045210 -
Rops6g00785 396 PANTHER WDSAM1 PROTEIN 1 391 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00785 Rops-Chr6 19917532 19918722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00785 1 394 U-box Gene Family AT3G52450 56.553 5.84e-164 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00785 - - gmx:100811258 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00785 6 19917532 19918722 Rops6g00785 6 19917532 19918722 ECH
Rops6g00785 6 19917532 19918722 Rops8g03558 8 75601722 75603310 PCT