Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00783 ATGAAGGATCCAGTTACTGTCTCCACAGGCATCACCTATGATCGAGAGAGCATTGAGAAATGGCTCCTTTCGTCCAAAAATAACACATGTCCAGTTACCAAACAACCCCTTCTCTCAGATTGCACTGATCTCACTCCTAACCACACCCTTCGTAGATTGCTTCAAGCATGGTGCACCATGAACGCTTCTCATGGTGTTGAAAGGATTCCAACTCCTAAGCCACCAGTCAACAAAACCATGATACAGAAACTCCTCAAGGACGCTTCTGAATCTTCTCAGTTGCAGATCCAATGCCTCCAAAGACTCAAATCCATCGCTTCTGAGAGTGAGACAAATAGACGCTGCATGGAAGCTTCTGGTGCTGTTGAGTTCTTAGCATCAGTTGTAACCAGCAACACCAAAGCTTCACTTTCCGCAGATGATGATGATGTTGATGGGTTTGACTTGAAAACAGGTGCAGGAGATGAAGCATTAAGCATCCTCTTTAGTCTCCATTTATCAGAAGAGGGTCTCAAGACTCTCCTAGCTTTCAAAAATGGAGAATTTATGGATTCCTTGATGAGAATCATGCAAAGGGGAATCTATGAGTCAAGAACTTATGCAGTTTTCTTGTTGAAATCTATGTCTGAAGTTGCTAATCCTGCGCAACTAGTAAATCTAAGAGGTGAATTTTTCCTGGAACTAGTTCAAGTCCTCAAAGACCAGGTTTCACAGAAGGCTTCAAAAGCAACACTACAGACACTAATCGAACTTGTTCCTTGGGGAAGGAACAGGGTGAAAACAGTGGAAGCAGGAGGTGTTCCAGTTTTGATAGAACTTCTTCTTGATTGTAAGGATAGAAAGCCTTGTGAGATGATGTTGGTTCTTTTGGAGATGTTGTGTCAGTGTGCAGATGGGCGTGCTGAGCTTCTGAGCCATGGAGCTGGATTAGCCATAGTTTCCAAGAAGATTCTGAGGGTTTCAATGATGGCAAATGATAGGGCTGCAAGGATTCTTCTATCAGTTTCAAGGTTCTCTGCAACACCAAGTGTTGTTCAAGAAATGCTGCAACTGGGTGTGGTGGCAAAACTGTGTTTGGTGGTTCAAGTGGATAGTGGAAACAAAGCAAAGGAGAAAGCAAGAGAGATACTCAAATTGCATGCAAGGGCATGGAGGAATTCTCCTTGCATACCTCCCAATTTGCTTGCTTCATACCCAACCAGTGGGTGA 1209 0.4367 MKDPVTVSTGITYDRESIEKWLLSSKNNTCPVTKQPLLSDCTDLTPNHTLRRLLQAWCTMNASHGVERIPTPKPPVNKTMIQKLLKDASESSQLQIQCLQRLKSIASESETNRRCMEASGAVEFLASVVTSNTKASLSADDDDVDGFDLKTGAGDEALSILFSLHLSEEGLKTLLAFKNGEFMDSLMRIMQRGIYESRTYAVFLLKSMSEVANPAQLVNLRGEFFLELVQVLKDQVSQKASKATLQTLIELVPWGRNRVKTVEAGGVPVLIELLLDCKDRKPCEMMLVLLEMLCQCADGRAELLSHGAGLAIVSKKILRVSMMANDRAARILLSVSRFSATPSVVQEMLQLGVVAKLCLVVQVDSGNKAKEKAREILKLHARAWRNSPCIPPNLLASYPTSG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00783 402 Pfam U-box domain 1 61 IPR003613 GO:0004842|GO:0016567
Rops6g00783 402 PANTHER WDSAM1 PROTEIN 1 391 IPR045185 GO:0061630
Rops6g00783 402 SUPERFAMILY RING/U-box 1 64 - -
Rops6g00783 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Rops6g00783 402 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Rops6g00783 402 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
Rops6g00783 402 CDD RING-Ubox_PUB 1 41 IPR045210 -
Rops6g00783 402 Gene3D - 65 387 IPR011989 -
Rops6g00783 402 SUPERFAMILY ARM repeat 80 386 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00783 Rops-Chr6 19893158 19894366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00783 1 399 U-box Gene Family AT3G52450 56.355 7.46e-166 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00783 - - gmx:100811258 603.979