Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00778 ATGAATGACTTGTTTTCTGGCTCATTCTCTCGCTTCCGTAGCGACCAAGCCTCGCCGGAGCACCACCATGTGATCGAGATGTCTTCCGCCACCACCGGTGGCGGCGGTGGAGGTGGAGGTGGAGGAGCGAACCTCGATAAGTTCTTCGATGACGTGGAAGGTGTGAAGGAGGAGCTGAAGGAACTAGAAGGGTTAGCACAGAGGCTACAGAACAGTCACGAGCAGAGCAAAACGGTTCATAATGCTAAGGGCGTGAAGGAGCTTCGTTCTCGCATGGACGACGACGTTTCGGTAGCACTTAAAAAGGCTAAGGTTGTGAAGCTTAAGCTTGAGGCTCTGGAACGTGCTAACGCTGCAAACCGGAACCTACCCGGGTGTGGACCCGGATCATCTTCGGATCGGACCCGAACCTCGGTGGTTAACGGGTTGAAGAAGAAGTTGAAGGACTCTATGGATACTTTTAACCGTCTCCGTGAGGTTATCTCTTCGGAGTATAGGGAGTCCGTTCAACGCCGTTACTTCACCGTTACTGGCGAGAATCCTGATGAGAAGACACTTGATCTGTTGATTTCCACGGGTGAGAGTGAGACCTTCCTTCAGAAAGCAATTCAAGAACAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCATGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGTTGGTGCAGTATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCCAGAGCTCACTCTTTTGTGCACACTGGAGCTGAGCGGTTACAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGCATCATACTTCTTCTGTTGATCATCTTATTTGTGGTGCTCTTCACTGTGAGACCTTGGGAAAAGAATAGTAGTGGTGGCAATGGTGGTAGTCAGCCTGCTCCAGCACAAACACCTCCATCTCCTCCTCCTCCTGCTGCTTAA 1014 0.501 MNDLFSGSFSRFRSDQASPEHHHVIEMSSATTGGGGGGGGGGANLDKFFDDVEGVKEELKELEGLAQRLQNSHEQSKTVHNAKGVKELRSRMDDDVSVALKKAKVVKLKLEALERANAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMDTFNRLREVISSEYRESVQRRYFTVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLMELHQVFLDMTVLVQYQGEQLDDIESHVARAHSFVHTGAERLQTARKHQKNTRKWTCYCIILLLLIILFVVLFTVRPWEKNSSGGNGGSQPAPAQTPPSPPPPAA* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00778 337 Gene3D - 42 175 - -
Rops6g00778 337 FunFam Syntaxin 132 208 308 - -
Rops6g00778 337 ProSitePatterns Syntaxin / epimorphin family signature. 221 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops6g00778 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 215 277 IPR000727 -
Rops6g00778 337 CDD SNARE_syntaxin1-like 214 276 - -
Rops6g00778 337 PANTHER SYNTAXIN 70 298 IPR045242 -
Rops6g00778 337 SMART tSNARE_6 210 277 IPR000727 -
Rops6g00778 337 MobiDBLite consensus disorder prediction 1 21 - -
Rops6g00778 337 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 42 172 - -
Rops6g00778 337 Pfam Syntaxin 47 250 IPR006011 GO:0016020
Rops6g00778 337 CDD SynN 45 202 IPR006011 GO:0016020
Rops6g00778 337 Pfam SNARE domain 251 303 IPR000727 -
Rops6g00778 337 SMART SynN_4 40 166 IPR006011 GO:0016020
Rops6g00778 337 Gene3D - 212 308 - -
Rops6g00778 337 MobiDBLite consensus disorder prediction 312 337 - -
Rops6g00778 337 SUPERFAMILY t-snare proteins 43 270 IPR010989 GO:0016020|GO:0016192
Rops6g00778 337 Coils Coil 45 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00778 Rops-Chr6 19798638 19801049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00778 37 333 SNARE and Associated Proteins AT3G11820 72.787 8.70e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00778 K08486 - gmx:100809258 483.796