Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g00777 | ATGAACGACTTGTTCTCCGGCTCCTTCGTCCCCTTCCGTAACACGGAGCAAGTCTCGCCGGACAACCATCACCACGTGATCGAGATGGCGTCGCCGTCATCGACTGACGGCGGGGTGAACCTTGACAAGTTCTTCGATGAAGTTGAGAAGGTAAAAGAAGAATTGAAAGAGTTGGAGCGTCTCCATGAGAATCTTCGAGTGTCTCACGAGAAGAGCAAGACCCTTCATAGTGCTAAAGCCGTGAAGGAGCTTCGTTCACGCATGGATGGTGACGTGGTACTTGCTCTTAAGAAAGCTAAGTTGGTTAAGGTCCGGCTCGAGGGGCTGGACCGGTCTAATGAGGCAAACCGGAGCTTGCCTGGAGCTGGACCCGGTTCGTCATCGGACCGGACCAGGACATCTGTTGTGGCTGGTTTGAGGAAGAAGCTGAAAGACTCCATGGATAGCTTCAACAACCTCAGAGAACAGATATCCTCAGAGTATAGGGAGACTGTACAACGTAGATACTACACTGTCACCGGAGAGAACCCTGATGACAAAACCATTGACCTCCTCATCTCTACTGGTGAAAGTGAAACATTCTTGCAGAAAGCAATCCAACAGCAAGGGAGAGCAAGCATCATGGACACGATCCAAGAGATTCAAGAGAGGCATGACACAGTGAAAGAGATAGAGAGAAATCTAAACGAGCTACACCAAGTGTTCTTAGACATGGCAGTCTTGGTCCAATCCCAGGGTGAACAATTGGATGACATTGAAAGCCACATGGCACGAGCCAATTCATACGTAAGGGGTGGGGTCCAGCAGTTGAATGTAGCTAGGAGACACCAGAAGAATACCCGAAAATGGACCTGCATGGCCATCATATTGTTGCTCATCATAATCTTGATTATAGTTCTCCCTATTGTTCTTAGAAACTGA | 921 | 0.4864 | MNDLFSGSFVPFRNTEQVSPDNHHHVIEMASPSSTDGGVNLDKFFDEVEKVKEELKELERLHENLRVSHEKSKTLHSAKAVKELRSRMDGDVVLALKKAKLVKVRLEGLDRSNEANRSLPGAGPGSSSDRTRTSVVAGLRKKLKDSMDSFNNLREQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASIMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHMARANSYVRGGVQQLNVARRHQKNTRKWTCMAIILLLIIILIIVLPIVLRN* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g00777 | 306 | Coils | Coil | 41 | 71 | - | - | |
| Rops6g00777 | 306 | SUPERFAMILY | t-snare proteins | 39 | 266 | IPR010989 | GO:0016020|GO:0016192 | |
| Rops6g00777 | 306 | FunFam | Syntaxin 132 | 204 | 304 | - | - | |
| Rops6g00777 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 211 | 273 | IPR000727 | - | |
| Rops6g00777 | 306 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 38 | 168 | - | - | |
| Rops6g00777 | 306 | Coils | Coil | 136 | 156 | - | - | |
| Rops6g00777 | 306 | CDD | SynN | 41 | 198 | IPR006011 | GO:0016020 | |
| Rops6g00777 | 306 | CDD | SNARE_syntaxin1-like | 210 | 270 | - | - | |
| Rops6g00777 | 306 | PANTHER | SYNTAXIN | 53 | 296 | IPR045242 | - | |
| Rops6g00777 | 306 | Pfam | SNARE domain | 247 | 299 | IPR000727 | - | |
| Rops6g00777 | 306 | Gene3D | - | 200 | 304 | - | - | |
| Rops6g00777 | 306 | MobiDBLite | consensus disorder prediction | 119 | 133 | - | - | |
| Rops6g00777 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 217 | 256 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Rops6g00777 | 306 | SMART | tSNARE_6 | 206 | 273 | IPR000727 | - | |
| Rops6g00777 | 306 | MobiDBLite | consensus disorder prediction | 113 | 133 | - | - | |
| Rops6g00777 | 306 | Gene3D | - | 39 | 171 | - | - | |
| Rops6g00777 | 306 | SMART | SynN_4 | 36 | 162 | IPR006011 | GO:0016020 | |
| Rops6g00777 | 306 | Pfam | Syntaxin | 43 | 246 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g00777 | Rops-Chr6 | 19766484 | 19768649 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g00777 | 29 | 285 | SNARE and Associated Proteins | AT3G11820 | 75.875 | 1.26e-145 | 410 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g00777 | K08486 | - | gmx:100793347 | 456.062 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops6g00777 | 6 | 19766484 | 19768649 | Rops6g00777 | 6 | 19766484 | 19768649 | ECH | |
| Rops8g03562 | 8 | 75654143 | 75655810 | Rops6g00777 | 6 | 19766484 | 19768649 | PCT |