Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00775 ATGGCGATGCAAACTGTTTACTTTAAAGAATATGAAGGGATTGTTCACAATTCTGTTGGACAGTTGTCATCTGTGACTTCAGCTCCATGGTGGAGTGCTTTTGGAACTCCAGCAGTTTATGGAGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAATTTTCCAACTATGTAGACCAACTTGGTGCCAGTAGGCAATCAGTAAGAGGAGTTGAACAGTTGTTGGATAAAGGACATACAACCCAGTTTACTATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCAGGAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGTTGCTGAGCCCCGTAACCATTTCGAGCTAGGATTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGGCTCTTCTCAACTTATGGACCTCAGATTTCGGGACGTGTAATGCTTCCACTGAACATGACATCCGATGATGGACCAACTTATGTAAATGCTAAGCAGTACAATGGAATCATCAGACGTAGGCAATCCCGTGCAAAAGCTGTACTTAAGAATAGATTGACAAAACGTTGCAAGCCCTATATGCATGAATCACGTCATCTGCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAATACAAGAAATTCTACTAATGAAAATGGTAAAGGTGGAAGTGAATTGAATAAGAAAACTGGTGGCCAACAATTGCAGTCCAGTGTCTCTAAGAGTTCTGAACTCCTGCAATCTGAGGTTGGAACTTTAAATTCATCAAAGGAGACAAATGGAAGCAGTCCAAATATCTCAGGGTCAGAGGTGACTAGCATGTATTCAAGGGGATGTCTTGATAACTTTGCTATCAATCATCTTGGATCTGCTGTTCACTCTCTGGCTGACATGATAGATAGTGGGCATGGTATTGCCATGCCTCCAAAATGGCTTTCACCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 999 0.4194 MAMQTVYFKEYEGIVHNSVGQLSSVTSAPWWSAFGTPAVYGESCGQMKPFSLEFSNYVDQLGASRQSVRGVEQLLDKGHTTQFTIFPDDCKMSGDAGNPQATLSLQSSLAVAEPRNHFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRVMLPLNMTSDDGPTYVNAKQYNGIIRRRQSRAKAVLKNRLTKRCKPYMHESRHLHAMRRPRGCGGRFLNTRNSTNENGKGGSELNKKTGGQQLQSSVSKSSELLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGCLDNFAINHLGSAVHSLADMIDSGHGIAMPPKWLSPAGNCCNLKV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00775 332 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 Gene3D - 161 223 - -
Rops6g00775 332 MobiDBLite consensus disorder prediction 203 278 - -
Rops6g00775 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 77 285 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Rops6g00775 332 MobiDBLite consensus disorder prediction 218 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00775 Rops-Chr6 19745481 19750622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00775 1 332 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.450 5.84e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Rops6g00775 CBFB_NFYA 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00775 K08064 - gmx:100808195 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03565 8 75667757 75672495 Rops6g00775 6 19745481 19750622 PCT