Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00773 ATGAACAACACAACTGATTACTCTGGATTCCTTGGCTCCAACAACATAAGTGGTTTTGGTTATGGCATAGGAATTTCAATTGGGATTCTCTTGCTCATCACAACCATCACACTTACTTCCTATTTTTGCACAAGGAGACAAGTGCCAGCTACACCAGCTCCTAGGAGAAACACCCCTGAATTCCTTGAGCCACAACACTCAATAGTGGATTTGGGGTTAGATGAGGCCACAATTATGAGTTACCCCAAGATGCTATATTCTGAAGCAAAGCTTAGGAAATCTGATTCCACAGCAACATGTTGCTCCATATGTCTGGCTGAATATAAAGGCAGTGATATGCTTAGGGTGTTGCCTGATTGTGAGCATCTTTTTCACCTCAAGTGCATAGACCCTTGGTTGAAGTTGCATCCTACTTGTCCTCTGTGCAGAACATCTCCACTCCCAACACCTCTCTCAACACCTCTGGCTGAAGTGGTTCCATTAGCAAGCAGAAGAGATTCATAG 504 0.4385 MNNTTDYSGFLGSNNISGFGYGIGISIGILLLITTITLTSYFCTRRQVPATPAPRRNTPEFLEPQHSIVDLGLDEATIMSYPKMLYSEAKLRKSDSTATCCSICLAEYKGSDMLRVLPDCEHLFHLKCIDPWLKLHPTCPLCRTSPLPTPLSTPLAEVVPLASRRDS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00773 167 CDD RING-H2_EL5-like 100 143 - -
Rops6g00773 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Rops6g00773 167 Pfam Ring finger domain 101 143 IPR001841 -
Rops6g00773 167 FunFam E3 ubiquitin-protein ligase ATL6 62 148 - -
Rops6g00773 167 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Rops6g00773 167 SUPERFAMILY RING/U-box 77 148 - -
Rops6g00773 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 157 IPR045899 -
Rops6g00773 167 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00773 Rops-Chr6 19715348 19715851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00773 6 163 C3H Transcription Factor Family AT2G35910 64.198 4.03e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00773 - - gmx:121172638 222.246