Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00760 ATGGCAACCCTGGGAAAGACATTCCTCACACTCTTATTGTTGTCTTCAGTTTTTTCAATAGCCTCATCAAGAAGAGGACCTTCCTCAAACAACATAGATTGGTGGTGCAACCTAACCCCACACCCTCAGCCATGCAAATACTACACAACTCAAATGAACTACCATTTCACAATCAAACATAAAACTGAATTCCGGGGAATACTTGTTCAATTGGCCTTAAAGCAAGCCCTCATCATGCACAGGGAAGCACATGATTATCAACAAAAGTTGGTGATTGAAAAGCACAAAACAATACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAGGTCTTAATGTGAAGAAGGGTTGCTCACCAGTTGATGCACAAACTTGGCTCACCACTGCTCTCACAAACATTGAAACCTGCAGAACCGGGGCTGAAGAACTCAGTGCTATAGATTTCAAGGTCCCAACTTGGAGCAACAATGCCACTGAGATGATAAGGAACAGCTTAGCCATCAATGTGGATTTCCTGAAACATAACACAGCTAATCACACAGCAGAAGCAGAAGAGGAATTTCCGAGTTGGTTTTCTGGGCATGAGAGGAAACTGTTGCAGTCTTCTTCCATAAAGGCAAATCTTGTGGTAGCAAAAGATGGTTCAGGAAACTTCAAGATTGTCCAAGATGCTCTGAATACAGCCGCAAAGAGAAAAAATAAAATGAGGTTTGTGATACATGTGAAGAAAGGGGTATATAAAGAGAATATTGAGGTTGCTGTGAAGAATGATAACTTAATGCTGATTAGGGCCGCTTCAGACCTCAGGCCTGTTGTTAACAAATACAACACCTTTTTGGGTAGGCCATGGCAGCAATACTCAAGAGTGGTGGTAATGAAAACCTTCATTGACAACTTGGTGAGCCCAATGGGTTGGTCTCCATGGGATGATACTGATTTTGCTCAGGACACACTGTATTATGGAGAGTATGAGAATTCTGGGCCTGGTTCATCTACAGACAAAAGAGTAAAATGGCCTGGTTTTCATGTGATAACAAGTCCAAAAGAGGCAGCACAATTCACAGTTACTGGACTCCTTGCTGGCCCCACATGGTTGCCTACCACTACTGTGCCATTTACCTCTGGCCTTTGA 1158 0.4257 MATLGKTFLTLLLLSSVFSIASSRRGPSSNNIDWWCNLTPHPQPCKYYTTQMNYHFTIKHKTEFRGILVQLALKQALIMHREAHDYQQKLVIEKHKTIHGDCLKLYENTIFHLNRTLEGLNVKKGCSPVDAQTWLTTALTNIETCRTGAEELSAIDFKVPTWSNNATEMIRNSLAINVDFLKHNTANHTAEAEEEFPSWFSGHERKLLQSSSIKANLVVAKDGSGNFKIVQDALNTAAKRKNKMRFVIHVKKGVYKENIEVAVKNDNLMLIRAASDLRPVVNKYNTFLGRPWQQYSRVVVMKTFIDNLVSPMGWSPWDDTDFAQDTLYYGEYENSGPGSSTDKRVKWPGFHVITSPKEAAQFTVTGLLAGPTWLPTTTVPFTSGL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00760 385 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Rops6g00760 385 SMART PMEI_2 27 176 IPR006501 GO:0004857
Rops6g00760 385 Gene3D - 209 273 IPR012334 -
Rops6g00760 385 Gene3D - 274 385 IPR012334 -
Rops6g00760 385 SUPERFAMILY Pectin lyase-like 212 271 IPR011050 -
Rops6g00760 385 CDD PMEI-like_3 34 177 - -
Rops6g00760 385 Pfam Pectinesterase 271 370 IPR000070 GO:0030599|GO:0042545
Rops6g00760 385 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Rops6g00760 385 SUPERFAMILY Pectin lyase-like 271 384 IPR011050 -
Rops6g00760 385 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Rops6g00760 385 PANTHER PECTINESTERASE 17 271 - -
Rops6g00760 385 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Rops6g00760 385 NCBIfam pectinesterase inhibitor domain 7 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00760 Rops-Chr6 19478329 19480772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00760 271 385 Carbohydrate Esterase AT3G47400 62.931 9.99e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00760 K01051 - gmx:100806133 346.665