Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00752 ATGATGTTGATGCAGTTGAGAGGGAGAATTGTTATTGTTCCAGAGATGGAAGGCAAGACTGAGAGTCATAGTACGTCAGCAATGGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAATTTTGTGAAAATGATCCTGCAAATGTCACCAATTGCAAACATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATGCTACTAGTCAAGAATTGCTTGAAGCAGTAGAGCATGAGAGGAGCTTGAGGAATACCCCATCAAGAAATGCTGCGATTTTTCATCATCCTGCCCTTGGTGATTTTGAATTGCAGCATTTACCAATTGGTGTAAACAATGCTGAAATTGAACAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCACACCACCTTGGTCAGAGGGAAAGTCGAAGAACTAGGTCATCAACTCGTGGCCATCCACACATGTTTGGATTCTCAAATGAGCCTAGTGCACCTCCATCAGGTCCTGACTCAGCTACTGGAGGGGGAAATGAACCAGCTGCAATTCCTGTAGGAAGTCCATCTACCCCTCTTACATCTGATGGAGATGAACCATCACCATCACACCAGATCCCACATTTTCATTCTCAAGGAATTCACTCTGATGATAGGAGGCCTACCACTCATTCTTCACCTTCAAACCAAGATGGAGCAACAGGGCCATCAGAATTCCAGTCATTTTCTGATTCTCTGCGGTCCAGATTGAATGCTGTGTCCCTGAGATACAAAGAATCAATTTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAAGAGAGAGTTGAATGCCGGAATAGCTAGTATATCCCGAATGATGGAGCGCCTTGAAACCAGAGAAAATAATAGGGCTGCTGACATCTTTCCTCAGCATATCATATTTGAAGGCTGTTTGCCCAGACATGACATGCTGAGGAATAGATGCTATGGGATAGTCATGGCAGTTGGTTTTCAATAA 1104 0.4447 MMLMQLRGRIVIVPEMEGKTESHSTSAMAFVEGGIQEACDDACSICLEEFCENDPANVTNCKHEFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVEHERSLRNTPSRNAAIFHHPALGDFELQHLPIGVNNAEIEQRIIQHLAAAAAMRRAHHLGQRESRRTRSSTRGHPHMFGFSNEPSAPPSGPDSATGGGNEPAAIPVGSPSTPLTSDGDEPSPSHQIPHFHSQGIHSDDRRPTTHSSPSNQDGATGPSEFQSFSDSLRSRLNAVSLRYKESISKGTRGWKERLFSRNSSMSELGSEVKRELNAGIASISRMMERLETRENNRAADIFPQHIIFEGCLPRHDMLRNRCYGIVMAVGFQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00752 367 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 21 93 - -
Rops6g00752 367 Coils Coil 308 328 - -
Rops6g00752 367 ProSiteProfiles Zinc finger RING-type profile. 43 83 IPR001841 -
Rops6g00752 367 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 27 91 - -
Rops6g00752 367 MobiDBLite consensus disorder prediction 209 231 - -
Rops6g00752 367 MobiDBLite consensus disorder prediction 246 264 - -
Rops6g00752 367 Pfam Ring finger domain 42 83 IPR001841 -
Rops6g00752 367 MobiDBLite consensus disorder prediction 156 264 - -
Rops6g00752 367 SUPERFAMILY RING/U-box 35 90 - -
Rops6g00752 367 SMART ring_2 43 83 IPR001841 -
Rops6g00752 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00752 Rops-Chr6 19343922 19350024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00752 40 91 C3H Transcription Factor Family AT4G00335 44.231 3.74e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00752 K19043 - gmx:100803582 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00752 6 19343922 19350024 Rops6g00752 6 19343922 19350024 ECH
Rops8g03578 8 75834955 75845045 Rops6g00752 6 19343922 19350024 PCT