Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00748 ATGTGTTTTGATTGCTGTTGCTGGATTGAACTTTGGTCTCGTATTCCATTTTCATATCATCCCCAAAGCAAGAAGAAACAGTTATTTGATTCTCGAGTGGTGACTATGGAGAGAGCAAATTCATCAGGGTTTATAATAAGAACGAAATCAGATCAGCTAGTGGAGTCGATGGTGGCGGCTCTGAAGTCGCCACCGTCGAGTGATCACTCGGCAAACGGAGGAGTGGAAGGTGGCGGAACGCTGTCAAGGAAGTCGAGCCGGCGGTTGATGGCGGGGGCATCGCCAGGGAGTGGTGGCAGTGGGAAAAACACACACATAAGGAAGTCAAGGAGTGCTCAGAGTCAGATATTGAAGTATGAACTTGATGAGTTGAATAGTGGAGCAGCACTTAGTAGAGCCTCAAGTGCTAGTTTGGGATTCTCATTCACTGGTTTCACTATGCCTCCTGATCAAATTGCTGATTCCAAACCTTTCAGTGATGATGAAATGATCCCGGAAGATATTGAAGCTGGAACTAGGACAAAGTTTCAAACAGAACCTACTCTGCCAATATATCTTAAGTTCACGGATGTGACATACAAGATAGTGCTAAAAGGCATGACAGCAACTGAGGAAAAGGAAATCTTGAATGGGATCACTGGTTCTGTAAATCCAGGTGAAGTTTTGGCATTGATGGGTCCCTCAGGGAGTGGAAAGACAACTCTTTTAAATCTGCTTGGAGGCAGGCTAAGTCAGCCCACAATTGGTGGTTCCATCACTTACAATGACCAATCATATTCCAAGTTCCTCAAGAGCAGGATAGGATTTGTGACACAAGATGATGTTCTGTTTCCTCACTTAACTGTGAAAGAGACATTGACTTATGCAGCCAGGCTAAGACTGCCAAAGACATTCACAAAAGAGCAAAAGGAAAAACGAGCTTTGGATGTCATCTATGAGCTTGGCTTAGAGAGGTGCCAAGACACTATGATTGGTGGTTCCTTTGTTCGCGGGGTATCTGGTGGAGAGAGGAAGAGAGTTAGTATTGGCAATGAGATCATAATCAACCCTTCTCTATTGTTTCTTGATGAACCAACATCTGGTTTGGATTCCACAACAGCCTTGAGGATTGTTCAGATGCTGCAAGACATAGCAGAGGCTGGTAAAACAGTAGTGACAACAATCCACCAACCATCAAGCAGACTCTTTCACAAATTTGACAAGTTGATCCTTCTTGGGAAAGGGAGCTTGCTTTACTTTGGAAAAGCATCAGAAACAATGAATTACTTCCAATCCATTGGATGTTCACCACTTATTTCCATGAACCCAGCAGAGTTTTTGCTTGATCTTGCTAATGGAAACATAAATGATGTTTCCCTACCCTCGGAGTTGGAGGATAGAGTGCAAATGGGAAATGCAGAAGCTGAAACTCAGAATGGGAAACCATCACCAGCAGTTGTTCATGAGTATCTGGTGGAGGCATATGAAACTCAAGTTGCGGAAACAGAGAAGAAAAAAATAATGGTTTCTGTCCCACTTGATGAAGCACTGAAAGTAAGCTCTCCTAAAAGACAATGGGGAGCAAGTTGGGATGAGCAATATTCCATATTATTTTGGAGAGGAATCAAAGAACGGAGGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCAATCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAGAACCCAAAAGATCTGCAAGATCAGGCAGGACTGCTTTTCTTTATTGCCGTTTTTTGGGGATTCTTTCCTGTTTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTTACAAAGGAAAGAGCAGCAGATATGTATAGACTAAGTGCATACTTCTTGGCTAGAACTACAAGTGACCTTCCACTAGACCTGATATTACCAGTACTTTTTCTCCTTCTAGTTTATTTCATGGCCGGTCTGAGACTCAGTGCTGGACCCTTTTTCCTCACCATTCTCACTGTTTTCCTCTGCATCGTGGCAGCTCAGGGTCTTGGACTTGCTATTGGGGCCACTCTTATGGACTTGAAAAGAGCAACAACTTTGGCTTCAGTAACTGTGATGACCTTCATGCTGGCTGGAGGATTTTTTGTGCAGAAAGTTCCCGTATTTATTTCTTGGATCCGGTACATGTCATTCAACTACCACACCTACAAACTTTTGCTCAAGGTGCAATATGAACACATCACACCAAGTGTAAATGGGATCAAAATTGACAGTTGTTTCACAGAGGTGGCTGCTCTAATTGCCATGGTTTTTGGTTACCGTTTCTTGGCATATCTTTCTTTGCGGCGAATGAAACTTCAATCTTGA 2337 0.4305 MCFDCCCWIELWSRIPFSYHPQSKKKQLFDSRVVTMERANSSGFIIRTKSDQLVESMVAALKSPPSSDHSANGGVEGGGTLSRKSSRRLMAGASPGSGGSGKNTHIRKSRSAQSQILKYELDELNSGAALSRASSASLGFSFTGFTMPPDQIADSKPFSDDEMIPEDIEAGTRTKFQTEPTLPIYLKFTDVTYKIVLKGMTATEEKEILNGITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSQPTIGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVSGGERKRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASETMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSLPSELEDRVQMGNAEAETQNGKPSPAVVHEYLVEAYETQVAETEKKKIMVSVPLDEALKVSSPKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAIILGLLWWQSDAKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLLVYFMAGLRLSAGPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVQKVPVFISWIRYMSFNYHTYKLLLKVQYEHITPSVNGIKIDSCFTEVAALIAMVFGYRFLAYLSLRRMKLQS* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00748 778 ProSitePatterns ABC transporters family signature. 332 346 IPR017871 GO:0005524|GO:0016887
Rops6g00748 778 Pfam ABC-2 type transporter 525 734 IPR013525 GO:0016020|GO:0140359
Rops6g00748 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 424 IPR027417 -
Rops6g00748 778 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 154 768 - -
Rops6g00748 778 SMART AAA_5 218 409 IPR003593 GO:0016887
Rops6g00748 778 MobiDBLite consensus disorder prediction 61 109 - -
Rops6g00748 778 Pfam ABC transporter 209 360 IPR003439 GO:0005524
Rops6g00748 778 CDD ABCG_EPDR 183 414 - -
Rops6g00748 778 FunFam ABC transporter G family member 22 196 426 - -
Rops6g00748 778 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 186 432 IPR003439 GO:0005524
Rops6g00748 778 Pfam ABC-2 type transporter 389 450 IPR043926 GO:0140359
Rops6g00748 778 Gene3D - 185 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00748 Rops-Chr6 19230757 19242378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00748 207 446 Calmodulin-binding Proteins AT2G36910 29.268 2.25e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00748 K05681 - gmx:100798801 1281.93