Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00746 ATGGGCAACAACTGTGTAGGACCAAACCTCGGTGGCAATGGCTTCCTTCAATCCGTTACGGCGGCGGTGTGGAAAACCCGGCCACCGGAGGGAAGGCTTCCACAGCCGAATGCCGAAGAAGACAAGAACAAATCTCCGGTGCCGGCGAATGCAGCCACCGATTCCTCCAAAGGAGGAGGATCAAGCACCGATAAACCTTCCCATGATTCAAAAAGCTCTGAAGGTTCCAAAGCTAATAATCCTCCAATGTCGGTTCAGAACACACCGCCTGAACAGGTGAAAATAACCGCCACGGAAACAAAACCGGTTCAAACCGTTCAACCTTCTAAACCAGAGGTAAATAATAATGAACCGGAACCTAGCACTGGTGGTGGTGGTGGTGATGCAGGGAAAGCTAAGAAACCAACTCATGTTAAAAGGGTATCAAGTGCTGGACTTCAAGTGGAATCTGTTTTGGGAAGAAAAACTGAGAATTTGAAAGATTTTTATAGTTTGGGGAGGAAGTTAGGCCAAGGGCAATTTGGGACAACTTTCCTTTGTGTTGAAAAGGGGACTAACAAGGAGTTTGCTTGCAAATCAATTGCTAAGAGGAAATTGACAACACAAGAAGATGTTGAGGATGTTAGGAGGGAGATTCATATCATGCACCATTTGGCTGGTCACCCTAATGTGATACAAATAATTGGTGCTTTTGAGGATGCTGTTGCTGTTCATGTTGTCATGGAGCTTTGTGCTGGTGGGGAACTCTTTGATAGGATCATACAAAGAGGGCATTACACTGAGAGACAGGCTGCTGAACTTGCTAGGTTGATTGTCAGTGTTGTTGAGGCTTGTCATTCTTTAGGTGTCATGCATAGAGACTTGAAGCCTGAGAATTTTCTCTTCATCAACCATCAAGAAGATTCACCTCTTAAGACAATAGATTTTGGACTCTCCATGTTCTTTAGACCAGGGGAAACATTCACTGATGTGGTTGGAAGCCCATACTATGTGGCCCCGGAAGTTTTGAGGAAGCACTATGGTCAAGAATGTGATGTTTGGAGTGCTGGGGTAATCATTTATATTTTATTGAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAAGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGATTTTGTTTCTGAACCGTGGCCTAGCATATCTGAAAGTGCAAAGGATCTTGTTCGAAGAATGCTTATAAGAGACCCTAAGAAACGAATGACAGCACATGAAGTACTTCGCCACCCCTGGGTTCAAATTGGAGGTGTTGCTCCTGATAGACCGCTCGATTCTGCTGTCTTATCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTGATTGCTGATAGTCTGTCTGAGGAGGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTGCCGCTCTTAAGGATTCTGAAATTCATTGGCTAATGCAAGCGGCAGACGTTGATAACAGTGGTACCATAGACTATGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGGTCCAGAAGGAGGATCATCTATTTGCAGCCTTCTCCTACTTTGACAAAGATGGGAGTGGATACATTACAAAAGATGAGCTCCAACAAGCCTGTGAACAATTTGGCCTAAAAGATTATCATCTCGATGAAATAATACGCGAAGTTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGTTGCAATGATGCAAGACACTGGTTTTGGCAAAAAGGGGATACAAAAGGCATGA 1839 0.4367 MGNNCVGPNLGGNGFLQSVTAAVWKTRPPEGRLPQPNAEEDKNKSPVPANAATDSSKGGGSSTDKPSHDSKSSEGSKANNPPMSVQNTPPEQVKITATETKPVQTVQPSKPEVNNNEPEPSTGGGGGDAGKAKKPTHVKRVSSAGLQVESVLGRKTENLKDFYSLGRKLGQGQFGTTFLCVEKGTNKEFACKSIAKRKLTTQEDVEDVRREIHIMHHLAGHPNVIQIIGAFEDAVAVHVVMELCAGGELFDRIIQRGHYTERQAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHQEDSPLKTIDFGLSMFFRPGETFTDVVGSPYYVAPEVLRKHYGQECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFVSEPWPSISESAKDLVRRMLIRDPKKRMTAHEVLRHPWVQIGGVAPDRPLDSAVLSRLKQFSAMNKLKKIAIRVIADSLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGAALKDSEIHWLMQAADVDNSGTIDYGEFIAAMLHLNKVQKEDHLFAAFSYFDKDGSGYITKDELQQACEQFGLKDYHLDEIIREVDQDNDGRIDYSEFVAMMQDTGFGKKGIQKA* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00746 612 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Rops6g00746 612 Gene3D - 437 530 - -
Rops6g00746 612 MobiDBLite consensus disorder prediction 73 121 - -
Rops6g00746 612 ProSiteProfiles Protein kinase domain profile. 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00746 612 ProSiteProfiles EF-hand calcium-binding domain profile. 500 535 IPR002048 GO:0005509
Rops6g00746 612 SMART efh_1 468 496 IPR002048 GO:0005509
Rops6g00746 612 SMART efh_1 574 602 IPR002048 GO:0005509
Rops6g00746 612 SMART efh_1 540 568 IPR002048 GO:0005509
Rops6g00746 612 SMART efh_1 504 532 IPR002048 GO:0005509
Rops6g00746 612 SMART serkin_6 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00746 612 MobiDBLite consensus disorder prediction 48 66 - -
Rops6g00746 612 Pfam Protein kinase domain 163 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00746 612 Pfam EF-hand domain pair 539 600 IPR002048 GO:0005509
Rops6g00746 612 Pfam EF-hand domain pair 469 529 IPR002048 GO:0005509
Rops6g00746 612 Gene3D - 447 599 - -
Rops6g00746 612 MobiDBLite consensus disorder prediction 21 141 - -
Rops6g00746 612 PANTHER SERINE/THREONINE-PROTEIN KINASE 154 595 - -
Rops6g00746 612 FunFam Calcium-dependent protein kinase SK5 249 433 - -
Rops6g00746 612 Gene3D Transferase(Phosphotransferase) domain 1 249 424 - -
Rops6g00746 612 ProSitePatterns Protein kinases ATP-binding region signature. 169 196 IPR017441 GO:0005524
Rops6g00746 612 ProSitePatterns EF-hand calcium-binding domain. 583 595 IPR018247 -
Rops6g00746 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Rops6g00746 612 CDD STKc_CAMK 162 420 - -
Rops6g00746 612 FunFam Calcium-dependent protein kinase 1 429 603 - -
Rops6g00746 612 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Rops6g00746 612 CDD EFh 540 600 IPR002048 GO:0005509
Rops6g00746 612 ProSitePatterns EF-hand calcium-binding domain. 513 525 IPR018247 -
Rops6g00746 612 SUPERFAMILY EF-hand 461 600 IPR011992 -
Rops6g00746 612 SUPERFAMILY Protein kinase-like (PK-like) 161 422 IPR011009 -
Rops6g00746 612 ProSiteProfiles EF-hand calcium-binding domain profile. 536 571 IPR002048 GO:0005509
Rops6g00746 612 FunFam Calcium-dependent protein kinase 1 165 248 - -
Rops6g00746 612 ProSitePatterns EF-hand calcium-binding domain. 549 561 IPR018247 -
Rops6g00746 612 ProSiteProfiles EF-hand calcium-binding domain profile. 574 605 IPR002048 GO:0005509
Rops6g00746 612 Gene3D Phosphorylase Kinase; domain 1 165 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00746 Rops-Chr6 19198066 19202591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00746 1 610 EF-hand Containing Proteins AT2G38910 73.115 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g00746 Pkinase 3.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00746 K13412 - gmx:100813232 989.178