LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g00744	ATGTCTTCCCCTCCCCAACCCCAAGTAGTAGAGGACTGCATGGGCTTCCCACAACTCTATAGCGACCGCACCGTTTCACGCTCCCATATAGAATTCCCACCCAACAACAACAACAACAACACCTCATACCCTTCAAAGACTACCTCTTCCACAAAACATTCAACCTCCACCTCCGTTTCTGCTTCGGCTCTTTCACCTGGCCCCACATTCACTCCTCTTGCCTCCGGCCTCCACGCTATTGTCGTCGCGCCAGACTACCGTTTGGAGCTGGAGCATCGTCTCCCATCGACAGTGGATGACGCCGTTGAGGCCGTGAGGTGGCTGAAGGACCACGGTGGGGACACGGGGTTGAATGAGAGCGTTGACTTTGACCGTGTCTTCGTCGTTGGTGACTCCTCTGGGGGGAACATTGCGCACCACCTCGCAGTTCGATTCGGTCCTGGTTCGAAGGAGATGGACCCGGTTCGGGTACGAGGTTATGTTCTACTGGGCCCATTTTTTGGTGGGGTGGTTCGGACCAGGTCAGAGGTGGGTCCCTCGGAACAAATGCTGACACTTGACATCCTAGACAGATTTTGGAGGCCATCGATGCCTATTGGAGAAACCAGAGACCATCCATTGGCGAACCCATTTGGACCATGCAGTCCGAACCTTATACATGTGAAGCTTGACCCTATGGAATTTCACACATTTGTAAAACCCAAATATGGTGTTGAGCCTGCAGAGGCTAGTGTCAAGAATACTTGTGGTGCAAAGCCTGGAGAGGATACTGTAGTAAAAGAATACTTGATCAACTCAGGAATCGTTGTTTCTTCATCTACGGTGAATCCTTCATCCCCGCTTGTTGCTTCGGATCCTGGTTTTGATTCTGTTGTAACTCAGAAGATTCTAGGGAAGCTGGAAGGCATAGAGGAGGGAATTGAGAAGGTGATTTATAGATGCCGGTTTTTGGCTATTCTGGGAGTATTTGGGTCTTTGATTGGATCATTTCTATGTTTTATCAAGGAAAGGAGTGCACAACAAAGAAGAAAGAATAATCATAGAGGGAATTGGAGGCCAAAAGAGCAACCCAACATCAGAATTATAAAATATATCAGAATGAAACCAAATCTAACACGAGATAGTGAGGATTTTGATGTGCTCAATTATTGGAAGATAAATGAGAAAAAATTCTCCACACTATCTATAATGGCACGAGATGTGTTGAGCATCCCAATTACTACAGTGGCATCAGAATCAGCTTTTAGTATTGGAGGGCGCATTCTTACAAAATACAGAAGTTCAACTCTTCCAAAAAATGTCCAAATGCTAATTTGCGCTCGAAATTGGTTGCATGGTTTTGTTCAAAATCCTAATGATGAAGGTGATTACAAAACTAGTTTTCATGATGTAATAGCAGAGGAGCCAGATACGCTTGAAGAAGATGAACCTGAAGACTAA	1440	0.4597	MSSPPQPQVVEDCMGFPQLYSDRTVSRSHIEFPPNNNNNNTSYPSKTTSSTKHSTSTSVSASALSPGPTFTPLASGLHAIVVAPDYRLELEHRLPSTVDDAVEAVRWLKDHGGDTGLNESVDFDRVFVVGDSSGGNIAHHLAVRFGPGSKEMDPVRVRGYVLLGPFFGGVVRTRSEVGPSEQMLTLDILDRFWRPSMPIGETRDHPLANPFGPCSPNLIHVKLDPMEFHTFVKPKYGVEPAEASVKNTCGAKPGEDTVVKEYLINSGIVVSSSTVNPSSPLVASDPGFDSVVTQKILGKLEGIEEGIEKVIYRCRFLAILGVFGSLIGSFLCFIKERSAQQRRKNNHRGNWRPKEQPNIRIIKYIRMKPNLTRDSEDFDVLNYWKINEKKFSTLSIMARDVLSIPITTVASESAFSIGGRILTKYRSSTLPKNVQMLICARNWLHGFVQNPNDEGDYKTSFHDVIAEEPDTLEEDEPED*	480

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops6g00744	479	Gene3D	alpha/beta hydrolase	57	234	IPR029058	-
Rops6g00744	479	PANTHER	BED FINGER-RELATED	221	448	IPR045259	-
Rops6g00744	479	SUPERFAMILY	alpha/beta-Hydrolases	70	213	IPR029058	-
Rops6g00744	479	Pfam	alpha/beta hydrolase fold	65	211	IPR013094	GO:0016787
Rops6g00744	479	MobiDBLite	consensus disorder prediction	28	65	-	-
Rops6g00744	479	SUPERFAMILY	Ribonuclease H-like	360	445	IPR012337	-
Rops6g00744	479	Pfam	hAT family C-terminal dimerisation region	363	444	IPR008906	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g00744	Rops-Chr6	19137307	19144478	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g00744	53	211	Carbohydrate Esterase	AT5G16080	37.500	7.90e-27	108

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g00744	-		-	gmx:100801473	254.988

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g00744	6	19137307	19144478	Rops6g00744	6	19137307	19144478	ECH
	Rops8g03585	8	75974921	75978677	Rops6g00744	6	19137307	19144478	PCT

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