Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00744 ATGTCTTCCCCTCCCCAACCCCAAGTAGTAGAGGACTGCATGGGCTTCCCACAACTCTATAGCGACCGCACCGTTTCACGCTCCCATATAGAATTCCCACCCAACAACAACAACAACAACACCTCATACCCTTCAAAGACTACCTCTTCCACAAAACATTCAACCTCCACCTCCGTTTCTGCTTCGGCTCTTTCACCTGGCCCCACATTCACTCCTCTTGCCTCCGGCCTCCACGCTATTGTCGTCGCGCCAGACTACCGTTTGGAGCTGGAGCATCGTCTCCCATCGACAGTGGATGACGCCGTTGAGGCCGTGAGGTGGCTGAAGGACCACGGTGGGGACACGGGGTTGAATGAGAGCGTTGACTTTGACCGTGTCTTCGTCGTTGGTGACTCCTCTGGGGGGAACATTGCGCACCACCTCGCAGTTCGATTCGGTCCTGGTTCGAAGGAGATGGACCCGGTTCGGGTACGAGGTTATGTTCTACTGGGCCCATTTTTTGGTGGGGTGGTTCGGACCAGGTCAGAGGTGGGTCCCTCGGAACAAATGCTGACACTTGACATCCTAGACAGATTTTGGAGGCCATCGATGCCTATTGGAGAAACCAGAGACCATCCATTGGCGAACCCATTTGGACCATGCAGTCCGAACCTTATACATGTGAAGCTTGACCCTATGGAATTTCACACATTTGTAAAACCCAAATATGGTGTTGAGCCTGCAGAGGCTAGTGTCAAGAATACTTGTGGTGCAAAGCCTGGAGAGGATACTGTAGTAAAAGAATACTTGATCAACTCAGGAATCGTTGTTTCTTCATCTACGGTGAATCCTTCATCCCCGCTTGTTGCTTCGGATCCTGGTTTTGATTCTGTTGTAACTCAGAAGATTCTAGGGAAGCTGGAAGGCATAGAGGAGGGAATTGAGAAGGTGATTTATAGATGCCGGTTTTTGGCTATTCTGGGAGTATTTGGGTCTTTGATTGGATCATTTCTATGTTTTATCAAGGAAAGGAGTGCACAACAAAGAAGAAAGAATAATCATAGAGGGAATTGGAGGCCAAAAGAGCAACCCAACATCAGAATTATAAAATATATCAGAATGAAACCAAATCTAACACGAGATAGTGAGGATTTTGATGTGCTCAATTATTGGAAGATAAATGAGAAAAAATTCTCCACACTATCTATAATGGCACGAGATGTGTTGAGCATCCCAATTACTACAGTGGCATCAGAATCAGCTTTTAGTATTGGAGGGCGCATTCTTACAAAATACAGAAGTTCAACTCTTCCAAAAAATGTCCAAATGCTAATTTGCGCTCGAAATTGGTTGCATGGTTTTGTTCAAAATCCTAATGATGAAGGTGATTACAAAACTAGTTTTCATGATGTAATAGCAGAGGAGCCAGATACGCTTGAAGAAGATGAACCTGAAGACTAA 1440 0.4597 MSSPPQPQVVEDCMGFPQLYSDRTVSRSHIEFPPNNNNNNTSYPSKTTSSTKHSTSTSVSASALSPGPTFTPLASGLHAIVVAPDYRLELEHRLPSTVDDAVEAVRWLKDHGGDTGLNESVDFDRVFVVGDSSGGNIAHHLAVRFGPGSKEMDPVRVRGYVLLGPFFGGVVRTRSEVGPSEQMLTLDILDRFWRPSMPIGETRDHPLANPFGPCSPNLIHVKLDPMEFHTFVKPKYGVEPAEASVKNTCGAKPGEDTVVKEYLINSGIVVSSSTVNPSSPLVASDPGFDSVVTQKILGKLEGIEEGIEKVIYRCRFLAILGVFGSLIGSFLCFIKERSAQQRRKNNHRGNWRPKEQPNIRIIKYIRMKPNLTRDSEDFDVLNYWKINEKKFSTLSIMARDVLSIPITTVASESAFSIGGRILTKYRSSTLPKNVQMLICARNWLHGFVQNPNDEGDYKTSFHDVIAEEPDTLEEDEPED* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00744 479 Gene3D alpha/beta hydrolase 57 234 IPR029058 -
Rops6g00744 479 PANTHER BED FINGER-RELATED 221 448 IPR045259 -
Rops6g00744 479 SUPERFAMILY alpha/beta-Hydrolases 70 213 IPR029058 -
Rops6g00744 479 Pfam alpha/beta hydrolase fold 65 211 IPR013094 GO:0016787
Rops6g00744 479 MobiDBLite consensus disorder prediction 28 65 - -
Rops6g00744 479 SUPERFAMILY Ribonuclease H-like 360 445 IPR012337 -
Rops6g00744 479 Pfam hAT family C-terminal dimerisation region 363 444 IPR008906 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00744 Rops-Chr6 19137307 19144478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00744 53 211 Carbohydrate Esterase AT5G16080 37.500 7.90e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00744 - - gmx:100801473 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00744 6 19137307 19144478 Rops6g00744 6 19137307 19144478 ECH
Rops8g03585 8 75974921 75978677 Rops6g00744 6 19137307 19144478 PCT