Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00739 ATGGACCCTGTTGGTGGAAGGTTTGGAGACGAGGATACTCCAAATCCAATAATGAAAACTACTAAGGTGCGGTGTTACATGGGAACCATTGTTGCCACTTGTGTGATCACTAATATGATGTTCCTAGTGTTGGGAGAAAGGTTGTTCTACTGGGCTGAAGAGAGAGCAGCCGCTACCCTTAGCCTCCTCTTCCCCTTTGCTAATTTCAGGATGGAATCCGGGGTGAAGCATGCTATCGTAATCAAAGTTATGGGTCGTACTGGATCCAGAGGCCAGGTGACCCAGCTAGGGTTTACCGGAGTTGCTCCATTCACTGCATCATCACCACACCGCATTCTGTGTGCCTCACTGACACCAACAATGGCTGACATCATCCATGAAGCCGGGGTTGTTCCAGATCCCACCCAGATCGATGTCAAGCTCTTCAACCGTTGGAGCTTCGACGACGTTCAGGTGAATGATATTTCTCTGGCTGATTATATTGGAGTGGTGGCATCGAAGCATGCCACCTATGTTCCTCACACTGCTGGTAGGTATTCAGCGAAGAGGTTCAGGAAAGCCCAGTGCCCCATTGTTGAGAGGCTCACAAACTCTCTCATGATGCACGGTAGAAACAATGGCAAGAAACTTATGGCTGTTAGGATCATCAAGCATGCTATGGAAATTATTCATTTGCTGACTGACCAGAACCCAATTCAGGTTATTGTTGATGCCGTCATCAACAGTGGTCCACGTGAAGATGCAACTCGAATTGGTTCTGCTGGAGTTGTTAGGAGACAGGCTGTGGATATCTCACCCCTGCGTCGTGTTAATCAAGCCATCTATCTCATAACAACAGGTGCACGTGAAGCTGCTTTCAGAAATATTAAGACTATTGCGGAATGCTTGGCTGATGAACTTATCAATGCAGCAAAAGGTTCATCAAACAGTTATGCTATAAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCAAATCGTTAA 984 0.4644 MDPVGGRFGDEDTPNPIMKTTKVRCYMGTIVATCVITNMMFLVLGERLFYWAEERAAATLSLLFPFANFRMESGVKHAIVIKVMGRTGSRGQVTQLGFTGVAPFTASSPHRILCASLTPTMADIIHEAGVVPDPTQIDVKLFNRWSFDDVQVNDISLADYIGVVASKHATYVPHTAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00739 327 NCBIfam 30S ribosomal protein S7 139 327 IPR005716 GO:0003735|GO:0006412|GO:0015935
Rops6g00739 327 SUPERFAMILY Ribosomal protein S7 140 327 IPR036823 -
Rops6g00739 327 CDD uS7_Eukaryote 140 327 IPR005716 GO:0003735|GO:0006412|GO:0015935
Rops6g00739 327 PANTHER RIBOSOMAL PROTEIN S7 137 327 IPR000235 GO:0006412
Rops6g00739 327 FunFam 40S ribosomal protein S5 125 327 - -
Rops6g00739 327 Pfam Ribosomal protein S7p/S5e 185 327 IPR023798 -
Rops6g00739 327 ProSitePatterns Ribosomal protein S7 signature. 193 219 IPR020606 GO:0003723|GO:0003735|GO:0006412
Rops6g00739 327 Gene3D - 69 101 IPR012340 -
Rops6g00739 327 Gene3D Ribosomal protein S7 domain 123 327 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00739 Rops-Chr6 19028653 19038542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00739 138 327 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 91.579 1.62e-129 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00739 K02989 - gmx:100305898 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00739 6 19028653 19038542 Rops6g00739 6 19028653 19038542 ECH