Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00729 ATGACAGTGACAGCTTCTTCTTCAATCTCACTTTTTCGATTGGCTTCTTCACGCTTCACAAAACCATTTCATCACCTCTTCTCATTCTCATTCTCATTCTCCACGACCTCACCGCTGCCACCTCCCATCCGAGTTGGACTCACCGAGTCAGTGGGCCGCGCCGTGTTCGCGACTCGCCCGATCCCTGCCGGCGATGTAATCCACACGGCTAAACCCGCCGTCTGTCACCCTTCTCCCTCCGCCGTCTATTCCGTCTGTTACGGCTGCCTCGCCAAACTTCCAAATGTCTCCACCACCCAACCTCACCGCCCCTCGTTTTGCAGCCACCCTTGCCATCAACGCTCTAAGGAATATTACGATGTAGAGATGAAGGCAAATGGGATGGCTTTTGATGACTATTGCCGGAACCATGGTGTGAAATTTCCCTTTCTGGTAAAGCGGTTGGCTTGCATGGTCATATCAGGAGTTGCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACACCGGAGATGATTTCACAGATGGAAGAGGGGTTTGCCTTGCTAAGGAACGCCTTCACAGAAGAACTAATTGCAGATGAACATATTGCTTTTTTAACCAAGCAATGGTACATTAGCGTATTGGCACGAATTCGAATCAATGTATTTCGCATTGAGTTGGCGGGAGGGCTATATGAAGATCTTCTTTCATCTGCAGTTGCATCTGTAGAAGCTGAAGCTGCTGTTGGACATGCTGTCTATATACTTCCATCATTCTACAATCATGATTGTGATCCTAATGCTCACATTATATGGATACATAACGCAGATGCAAAATTGAAGGCCCTCCGTGACATAGAAGAAGGTGAAGAACTCAGAATCTGCTACATTGATGCCAGCCTGGACCGTGATGCTCGGCAAGAACTATTGTTTCGTGGTTTTGGTTTTCAATGCAATTGTAATAGTGATTGCAGAGACCTTGTCCACTATCGAATTGCTCAAAGAATCAAGAAATTTCGGTTTGCTCGTGTGAGTTCTCTCCAATCTTCAACCACCATAACAATCAAGAAATATGGGTTAGCCTCCTAG 1077 0.4652 MTVTASSSISLFRLASSRFTKPFHHLFSFSFSFSTTSPLPPPIRVGLTESVGRAVFATRPIPAGDVIHTAKPAVCHPSPSAVYSVCYGCLAKLPNVSTTQPHRPSFCSHPCHQRSKEYYDVEMKANGMAFDDYCRNHGVKFPFLVKRLACMVISGVARSDSLDILQPANLTPEMISQMEEGFALLRNAFTEELIADEHIAFLTKQWYISVLARIRINVFRIELAGGLYEDLLSSAVASVEAEAAVGHAVYILPSFYNHDCDPNAHIIWIHNADAKLKALRDIEEGEELRICYIDASLDRDARQELLFRGFGFQCNCNSDCRDLVHYRIAQRIKKFRFARVSSLQSSTTITIKKYGLAS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00729 358 CDD SET_SMYD 246 316 - -
Rops6g00729 358 SUPERFAMILY SET domain 39 317 IPR046341 -
Rops6g00729 358 ProSiteProfiles SET domain profile. 41 293 IPR001214 GO:0005515
Rops6g00729 358 Pfam SET domain 52 292 IPR001214 GO:0005515
Rops6g00729 358 Gene3D SET domain 54 317 IPR046341 -
Rops6g00729 358 Gene3D - 133 218 - -
Rops6g00729 358 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 39 317 - -
Rops6g00729 358 SMART set_7 41 299 IPR001214 GO:0005515
Rops6g00729 358 Gene3D - 85 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00729 Rops-Chr6 18812941 18818428 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops6g00729 SET 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00729 - - tpra:123906125 455.677