Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00723 ATGGGCGTCAATTCCTTACCATCGGAGGAATCCATCCTCGATCTCGATGAGCAGATCTCACAGCTCATGCAATGCAAGCCAATCTCCGAACAACAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTAATGAATGAAAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGTGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTCCAAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGCGACTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTCCTTGTGGCACTGAAAGTGCGGTACCATCAGCGAATTACAATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGGTTTTATGATGAATGCCTAAGAAAGTATGGTAATGCTAGTGTTTGGAAGATCTTTACTGACCTTTTTGATTTCTTTCCACTGACTGCATTGGTTGAATCAGAAATATTTTGTTTGCACGGTGGACTTTCACCTTCAATTGAGACCCTTGATAACATAAGAAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTCTTGTGGTCTGACCCAGATGATAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCCGAACAATTTAATCACACAAACAATCTTAAGTTGATTGCTAGAGCTCATCAGCTAGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGCCACACTTTTATCCAGTTTGAACCTGCTCCCAGGAGAGGAGAACCTGATATCACCCGAAGAACGCCCGATTACTTCCTATGATGTTGCTGCTGCATATCATCATATCGGTATTGCAATTACATCTCATTCTACACAGTTTCAGACAGGTAACGTTCCACTTATTTGTGACGCTCAAGAACTTGCTCGATACCGTGTTGGAGAAGTCACCTTGATGATGGCTATGTCAGATTTTGTATTGTTCTCTCAAAATGTGGATATGTTTTTTGTTTGTGTTTTCGCCGTCTTTAGAAGCAATGACTGA 1083 0.4155 MGVNSLPSEESILDLDEQISQLMQCKPISEQQVRVLCEKAKEILMNESNVQPVKSPVTICGDIHGQFHDLAELFQIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESRQITQVYGFYDECLRKYGNASVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMDGFNWAHEQKATLLSSLNLLPGEENLISPEERPITSYDVAAAYHHIGIAITSHSTQFQTGNVPLICDAQELARYRVGEVTLMMAMSDFVLFSQNVDMFFVCVFAVFRSND* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Rops6g00723 360 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
Rops6g00723 360 Gene3D - 7 311 IPR029052 -
Rops6g00723 360 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Rops6g00723 360 CDD MPP_PP2A_PP4_PP6 14 268 - -
Rops6g00723 360 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Rops6g00723 360 SUPERFAMILY Metallo-dependent phosphatases 7 266 IPR029052 -
Rops6g00723 360 SMART pp2a_7 28 311 IPR006186 GO:0016787
Rops6g00723 360 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 14 268 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00723 Rops-Chr6 18737960 18744480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00723 20 244 Calmodulin-binding Proteins AT5G63870 34.082 1.52e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00723 K04382 - gmx:100801108 523.087