Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00720 ATGTCTGCAACAATGAGAACTTCATGGGCTGATTCTGCTGACAATTCAGCCAATGGTTCTTCCAATACCTCGGCACGCCGGCCAGCATATGTTCCTCCACATCTTCGCAACCGGCCGGTGTCTTCAGAGGCCCCGGTGACATCGCATTCACCTTCTTTGCCGGCTAATGACAGGGCGAATTATGGCGGTCCTTATGGGGGCAGTTCCTATAAGCCTGATCTTGGTCGGCAAGGATATGGTCCTAGTACTCAGAGTGGTGGTGAATGGAACGGTAGAGGGGTAGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAAAATGATGAAGCTTTGGATCAATCTCTTAGTGAGCAAGAGAACACAGGCATTAATTTTGATGCTTATGATGATATCCCTGTGGAGACTACTGGGGAGAATGTGCCCCCACCTGTGAACATATTTGCTGAAATAGATTTGGGTGAGGCAGTGAATCAAAACATACTGAGATGCAAGTATGTCAAACCAACCCCGGTTCAGAGGTATGCCATACCAATTTCTATAGCGGGGCGAGATTTGATGGCTTGTGCTCAGACAGGGTCAGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGGATCATGAGGGAGCAGTATGTTCAAAGACCACGTGTAGCACGAACTGCTTTTCCTCTGGCACTTATCCTCTCCCCTACCCGGGAGCTTTCTTGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGTGTATGGAGGAGCACCAATCAACCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGACTGGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAGATAAGAAAGATAGTTCAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACAATGCTGTTTAGTGCTACATTTCCCAAAGAGATTCAGAGACTTGCATCAGATTTTCTTGCAAATTATGTGTTTCTGGCAGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTTATGGACCTTCTTCATGCTCAGAGGGAAAATGATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCTTTGGAACACTGCTTATGTGTTAATGGGTTTCCTGCAACTTGCATTCATGGTGACAGGACACAACAAGAAAGAGAACTAGCACTGAGGTCGTTTAAGAGTGGAAACACGCCAATTCTGGTGGCAACAGATGTTGCAGCACGTGGTCTTGATATTCCACGAGTAGCACATGTGGTAAATTTTGATCTCCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGAGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGAAGGTAATTTGTCCTTGGCTAAATCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGTCTGGCTCACCCGTTATGCAGCAAGGGCTTCTTATGGTGGTGGCAACCGAAATAGGCGGTCAGGGGGAGGCCGGTTCGGTGGCCGTGATTTTAGGAAGGAGGGCTCGTTTAATAAAGCAACAGATTACTATGGTGGAACTGGTGGATATGGGGTTCCTGGCAATTATGGTGGAGGATATGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1800 0.4678 MSATMRTSWADSADNSANGSSNTSARRPAYVPPHLRNRPVSSEAPVTSHSPSLPANDRANYGGPYGGSSYKPDLGRQGYGPSTQSGGEWNGRGVGRDRGRREVNPFENDEALDQSLSEQENTGINFDAYDDIPVETTGENVPPPVNIFAEIDLGEAVNQNILRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVVYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVQQMDMPPPGMRQTMLFSATFPKEIQRLASDFLANYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLSLAKSLADLMQEANQEVPVWLTRYAARASYGGGNRNRRSGGGRFGGRDFRKEGSFNKATDYYGGTGGYGVPGNYGGGYGQGVTSAWD* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00720 599 CDD DEADc_DDX3_DDX4 148 367 IPR044763 GO:0003724|GO:0005524
Rops6g00720 599 SMART helicmild6 417 498 IPR001650 -
Rops6g00720 599 Gene3D - 102 362 IPR027417 -
Rops6g00720 599 MobiDBLite consensus disorder prediction 41 55 - -
Rops6g00720 599 MobiDBLite consensus disorder prediction 1 27 - -
Rops6g00720 599 FunFam ATP-dependent RNA helicase RhlB 364 541 - -
Rops6g00720 599 Pfam DEAD/DEAH box helicase 170 350 IPR011545 GO:0003676|GO:0005524
Rops6g00720 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 514 IPR027417 -
Rops6g00720 599 Pfam Helicase conserved C-terminal domain 384 498 IPR001650 -
Rops6g00720 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 537 IPR001650 -
Rops6g00720 599 FunFam Probable ATP-dependent RNA helicase DDX4 109 363 - -
Rops6g00720 599 CDD SF2_C_DEAD 373 507 - -
Rops6g00720 599 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 116 537 - -
Rops6g00720 599 MobiDBLite consensus disorder prediction 93 108 - -
Rops6g00720 599 Gene3D - 363 542 IPR027417 -
Rops6g00720 599 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Rops6g00720 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 361 IPR014001 -
Rops6g00720 599 MobiDBLite consensus disorder prediction 1 114 - -
Rops6g00720 599 SMART ultradead3 165 376 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00720 Rops-Chr6 18707213 18713042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00720 130 531 Eukaryotic Initiation Factors Gene Family AT3G19760 31.204 4.64e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00720 K11594 - gmx:100818326 944.88