Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00709 ATGTTGTGCTGTGGCGGTGCAGAAGAGGATATCACCGGTCTAGCTGCAAACCATTACAGTGCATCACCTAGAGGGGGTAATACATACGGTGGTGGAGGAGGTGGTGACAGAGGAGAGCCAAGGGGCAATGTTGCTAAGAGTGGTGCTCCACAGAAAGCATTACCAATTGAGATACCTGCTATTTCATTGGATGAGTTAAATCGTTTAACAAACAACTTTGGTACAAAGGCTTTGATTGGAGAAGGTTCCTATGGGAGGGTTTTCTATGCAAAGTTGAGCAATGGTGTGGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCAGAATTTGCTGGACAGTTATCAGTTGTTTCAAGACTGAAGCATGAGCACTTTGTGGAGTTGATGGGATATTGTCTGGAGGCGAATAACAGAATTTTGGTTCACCAATATGCGAGTCTGGGTTCTTTGCATGACATATTACATGGAAGGAAAGGAGTGCAAGGGGCTGAACCTGGTCCAGTTTTAAACTGGAATCAAAGAGTAAAAATTGCCTCTGGTGCAGCAAAAGGGCTTGAGTATCTTCATGAGAAGGTTCAGCCTTCTATAGTTCATCGAGATGTTAGATCCAGCAATGTGTTACTGTTCAATGACTATGAAGCTAAGATTGCAGATTTCAACTTGACAAATCAGTCTTCTGACACAGCAGCTCGACTTCATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCCCCAGAGTATGCTATGACTGGACAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCTGTGGACCATACAATGCCGAAAGGGCAACAAAGTCTTGTAACATGGGCAACTCCAAGACTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCACCAAAGGCAATTGCTAAGTTGGCAGCGGTTGCAGCACTATGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACAATTGTTGTCAAAGCTCTGCAGCCACTTCTCAATTCAAAACCGGCTGGCCCTGACTCAAATGCTTGA 1101 0.4387 MLCCGGAEEDITGLAANHYSASPRGGNTYGGGGGGDRGEPRGNVAKSGAPQKALPIEIPAISLDELNRLTNNFGTKALIGEGSYGRVFYAKLSNGVDAAIKKLDTSSSPEPDSEFAGQLSVVSRLKHEHFVELMGYCLEANNRILVHQYASLGSLHDILHGRKGVQGAEPGPVLNWNQRVKIASGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGPDSNA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00709 366 Pfam Protein tyrosine and serine/threonine kinase 77 351 IPR001245 GO:0004672|GO:0006468
Rops6g00709 366 FunFam probable protein kinase At2g41970 46 149 - -
Rops6g00709 366 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Rops6g00709 366 Gene3D Transferase(Phosphotransferase) domain 1 151 361 - -
Rops6g00709 366 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00709 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 359 - -
Rops6g00709 366 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Rops6g00709 366 FunFam PTI1-like tyrosine-protein kinase 3 151 360 - -
Rops6g00709 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Rops6g00709 366 MobiDBLite consensus disorder prediction 17 50 - -
Rops6g00709 366 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Rops6g00709 366 SUPERFAMILY Protein kinase-like (PK-like) 54 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00709 Rops-Chr6 18162598 18166788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00709 61 354 Trihelix Transcription Factor Family AT5G38560 44.333 1.85e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Rops6g00709 PK_Tyr_Ser-Thr 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00709 - - gmx:100786291 637.876