Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00708 ATGGCTCCAGGAGGGAGTTCTTTCAAAGAAATTCTTGAGCCTCACCTGATATTTTCAGATTATGAGACCATTAAGTCTAAATCTGAGGCCAATGGTAATAGTACTTTCACAAAATCTAGGGCCGGGTTGAGTGGAAAGAATGGTGTCTATGACTTACTCGAGTGCCCTGTTTGCAAGAATTTGATGTATCCTCCAATTCATCAGTGCCCAAATGGCCACACATTATGTTCAAATTGTAAGATTGCAGTGCATAACTGTTGCCCCACATGTCGTTGTGATCTTGGGAATATAAGGTGTTTGGCTCTAGAGAAAGTGGCCGAATCGATGGAGCTTCCTTGCAGATACCAGAGTGTAGGTTGTCATGATACATTCCCATACTACACTAAGCATAAGCATGAGCAAAATTGTAAATTTCGTCCATACAATTGCCCCTATGCTGGATCAGAATGCTCTGTGATGGGTGACATTCCAACTGTTATGGCCCATCTCAAGGATGATCACAAGGTTGACATTCATGATGGATGCACCTTTAACCATCGATATGTCAAATCGAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATTGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTCCTGCTTGGAACAGCTCCAGTTTACATGGCCTTTTTAAGATTTTTGGGTGATGACAGTGAGGCAAAAAAATTCAGGTACAGTTTGGAAGTTGGTGCAAATAGCCGCAAACTTATATGGCAAGGAATTCCAAGGGGTGTTCGTGAGAGTCATAGAAAAGTTCGTGAAAGTCAAGATGGACTCATCATTCAGAGGAACCTAGCTGTTTATTTTTCTGGTGGGGATAGACAACAATTAAAGTTGAGGGTCACTGGTCGTATATGGAAAGAAGATTGA 912 0.4145 MAPGGSSFKEILEPHLIFSDYETIKSKSEANGNSTFTKSRAGLSGKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIAVHNCCPTCRCDLGNIRCLALEKVAESMELPCRYQSVGCHDTFPYYTKHKHEQNCKFRPYNCPYAGSECSVMGDIPTVMAHLKDDHKVDIHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFLLGTAPVYMAFLRFLGDDSEAKKFRYSLEVGANSRKLIWQGIPRGVRESHRKVRESQDGLIIQRNLAVYFSGGDRQQLKLRVTGRIWKED* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00708 303 SUPERFAMILY RING/U-box 46 97 - -
Rops6g00708 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 142 IPR013083 -
Rops6g00708 303 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 106 - -
Rops6g00708 303 CDD RING-HC_SIAHs 53 91 - -
Rops6g00708 303 Gene3D Classic Zinc Finger 143 164 - -
Rops6g00708 303 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 302 - -
Rops6g00708 303 FunFam E3 ubiquitin-protein ligase SINAT5-like 164 296 - -
Rops6g00708 303 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 296 IPR008974 GO:0005515
Rops6g00708 303 SUPERFAMILY TRAF domain-like 111 300 - -
Rops6g00708 303 ProSiteProfiles Zinc finger RING-type profile. 55 91 IPR001841 -
Rops6g00708 303 FunFam E3 ubiquitin-protein ligase SINAT3 107 163 - -
Rops6g00708 303 Pfam Seven in absentia protein family 97 296 IPR018121 GO:0005737|GO:0006511|GO:0007275
Rops6g00708 303 ProSiteProfiles Zinc finger SIAH-type profile. 108 168 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00708 Rops-Chr6 18142062 18146656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00708 1 303 C3H Transcription Factor Family AT2G41980 76.547 4.49e-180 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00708 K04506 - gmx:100813966 553.132