Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00704 ATGGAACTGGCTTTGAGCTTAGGAGACACACCAAAACCTTTCTCTTTTCTTGAAAAAACTGCAAATTTGGCCTCTAAAGACCCACCAGGTTTTTGTATAGCAAGAGGGGTGCAAAATTTCACCTCAGATGGAAAGAGGGTTGATGAAGAGAAAAGGGGTTCTTCAGATCCACCCATTCAACTCAACCTTCTTCCTTTCACTCCAGTTTTAAGATCTCACCCTTCTTCTCCCCTTCAAATTCCTTGGCTCACTGAACCATATGGACCGGTGAGGGCGCTGGACGTGAACCGTTTTCCGGTGGCCGCCACGGCGGCGGAGGACGCCGACGATGGGACCTCACTGTCATCACCCAATAGTGCCGTGTCAGCGTTTCAGTTAGATTTCAGTGTGAGGAATAGTAATGCAGAAAGTGGAGGGAGAAACAAGAGAGAGAACGAGGGTGAAGCAGAGAGAGCGAGTGATGATGAGGAAAATGGTTCAACTCGGAAGAAACTCAGACTCTCTAAAGAACAATCAGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCAAAGCAAAAATTGGCACTGGCAAAACAGTTGAATCTACGACCTCGTCAAGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACTTTGACGGAAGAGAATAGGAGGTTACAGAAGGAACTTCAAGAACTAAGAGCCTTGAAAACTTCTAAGCCATTCTACATGCAGCTTCCAGCTACCACTCTCACCATGTGTCCCTCTTGTGAACGTGTGGCTACAAACTCCTGTACTGGAACCACCTCGGTCACCACGTCAAACACCAACAACAATGGTTATCAAATACCAGTGGAGTTGTCTCTTAGCAAGCCCAGAATATTGCCCTTCCCAAGTGGTCAAGCCCAAACACAACAGGCCCAAGCCCAAGCCAATCAGATTGCTTCATGA 996 0.4629 MELALSLGDTPKPFSFLEKTANLASKDPPGFCIARGVQNFTSDGKRVDEEKRGSSDPPIQLNLLPFTPVLRSHPSSPLQIPWLTEPYGPVRALDVNRFPVAATAAEDADDGTSLSSPNSAVSAFQLDFSVRNSNAESGGRNKRENEGEAERASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSKPFYMQLPATTLTMCPSCERVATNSCTGTTSVTTSNTNNNGYQIPVELSLSKPRILPFPSGQAQTQQAQAQANQIAS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00704 331 MobiDBLite consensus disorder prediction 137 165 - -
Rops6g00704 331 Gene3D - 166 216 - -
Rops6g00704 331 CDD homeodomain 162 219 IPR001356 GO:0003677
Rops6g00704 331 SMART HOX_1 160 222 IPR001356 GO:0003677
Rops6g00704 331 SUPERFAMILY Homeodomain-like 157 219 IPR009057 -
Rops6g00704 331 MobiDBLite consensus disorder prediction 132 165 - -
Rops6g00704 331 FunFam Homeobox-leucine zipper protein 18 147 223 - -
Rops6g00704 331 Coils Coil 224 254 - -
Rops6g00704 331 Pfam HD-ZIP protein N terminus 90 123 IPR006712 GO:0005634
Rops6g00704 331 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677
Rops6g00704 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 49 292 - -
Rops6g00704 331 SMART halz 218 261 IPR003106 GO:0006355|GO:0043565
Rops6g00704 331 Pfam Homeodomain 162 216 IPR001356 GO:0003677
Rops6g00704 331 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Rops6g00704 331 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00704 Rops-Chr6 18007983 18009952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00704 58 276 Homeobox Transcription Factor Family AT5G47370 57.328 1.82e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops6g00704 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00704 K09338 - gmx:100779138 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00704 6 18007983 18009952 Rops6g00704 6 18007983 18009952 ECH
Rops8g02919 8 65381632 65383366 Rops6g00704 6 18007983 18009952 PCT