Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00685 ATGGATGTCCGTAAGCGAGGAAGGCCTGAAGCTGGCTTCAACCTTAACGGTGCCGTTAAGAAGACCAAGCAAGAAATGGAAGCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGCGAGGGCTGCCACTTTTTGCATTATGTTCCTGGTGGTTATAATGTGGTTGCCCAGATGAAGAATCTGAAACATGCAGCACCTCCATCATCTAGAAATGTTGCAGCACCCCCACCACCACCAATTCCTAATGGGTCTGCCCCATCTGCTGTTAAAACCCGCATATGTAACAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCCCCATCAATTGATGATCATCGCCATATGGGACCTCCTACAACAGGTCGTATGGCTGGTCGAATTGAGGCTCCTCCTCGTCCGGCTGCTAGCTTTGGAGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCCTTGGCCGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCCAAACTTTCAATTCGCGAGCATGAATCTGATCCAAATCTTAGAAATATCGAACTTGAGGGAACCTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAAGATCTACTTTTGACTGTGTCAATGTCCGCCCCACCCAAATCCACCCCAGGTGTCCCTGGTGCCCCAGCCCCATCTGGAAGCAACTTCAAGACCAAGTTGTGTGATAATTTTGCAAAAGGGTCTTGCACCTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGAATTGCGCAAACTAGGAATCTGA 894 0.4754 MDVRKRGRPEAGFNLNGAVKKTKQEMEALSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNVVAQMKNLKHAAPPSSRNVAAPPPPPIPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRHMGPPTTGRMAGRIEAPPRPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVPGAPAPSGSNFKTKLCDNFAKGSCTFGERCHFAHGAAELRKLGI* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00685 297 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Rops6g00685 297 ProSiteProfiles Type-1 KH domain profile. 170 234 - -
Rops6g00685 297 Gene3D - 96 133 - -
Rops6g00685 297 Gene3D - 262 294 - -
Rops6g00685 297 MobiDBLite consensus disorder prediction 78 99 - -
Rops6g00685 297 CDD KH-I_AtC3H36_like 173 238 - -
Rops6g00685 297 Gene3D K Homology domain, type 1 166 261 IPR036612 GO:0003723
Rops6g00685 297 FunFam Zinc finger CCCH domain-containing protein 258 294 - -
Rops6g00685 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 240 IPR036612 GO:0003723
Rops6g00685 297 SMART kh_6 169 239 IPR004087 GO:0003676
Rops6g00685 297 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Rops6g00685 297 SMART c3hfinal6 101 128 IPR000571 GO:0046872
Rops6g00685 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Rops6g00685 297 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Rops6g00685 297 Pfam KH domain 173 235 IPR004088 GO:0003723
Rops6g00685 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Rops6g00685 297 FunFam Zinc finger CCCH domain-containing protein 96 133 - -
Rops6g00685 297 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Rops6g00685 297 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 140 IPR045877 GO:0003729
Rops6g00685 297 MobiDBLite consensus disorder prediction 83 97 - -
Rops6g00685 297 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Rops6g00685 297 SUPERFAMILY CCCH zinc finger 263 293 IPR036855 GO:0046872
Rops6g00685 297 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Rops6g00685 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Rops6g00685 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00685 Rops-Chr6 17610476 17616483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g00685 KH_1 3.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00685 - - gmx:100817463 511.916