Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00682 ATGGCGTCTAAAGGTCCTAAGTCCAGGATTGATCACGAGACCAGAGCTAAACGGCAAAAGACTCTTGAAGCTTCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTCGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTGCTTTAAAAGCCAGCAAAGGCATGTTGGATCAGGCTACAAGAGGGGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCTCTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTTTTTATAAGCATCAAATGGAGCTTGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTTTTAGGGCAAACTGAAAGATACTCAACAATGTTGGCAGAAAATCTTGTGGATGCTTATAAACCAGCAGAGAAAAATTCTGCACAACATCACATGAGTATTCAATACAAAGATGTGGATGAAGACATTATCAATGAACTTAAGGAAGCTAATGTTGCAGAGGATCAATCAGATGCACCTGATCATGATGAAGAATATGATGTACAATCCGATGATGAATTGGAGGATGATGAACAGACCCTTGAAGAAGATGAGGCTCATATAACTAAGGAAGAAAGGCAAGAGGAATTGGCAGCTTTGTATGACGAAATGAATCTTCCAATTGAAGAGTTACGCAAGCGTTATGCTGGAGAGAGAGGAGAATCTGTAAGGCAAGAAAGTAGTCCAGCGCATAGTGAAGATGGTGGAAAAATAGTTAGAACTGGTGATGCTGATGAAAATGGAGATCTTTTATCTGTCAGCAAAATTGCTACAAACAACTCCGGCATGGTCCCTGGTCGACGTTGTGATGAAAGTAATGGTGACGTAGCTACACCAACAAACAATCTATCTCAATGTGAGGACTGTCAATCTGAAGATCTTGAAGAGGTTCCCAGTGAGACGGCCAATGAAAATTCTGCATATGATTTTACAGATGAAGAGGAAGACGGTGACTTTTCATTTGACACAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGGCTGCAAGGTATGAAAAGATTGCATTATTACTAAAGGAGAGTGACATGCCTGTTGAGGAACCGGTTGCAAGGTATGAAAAGGACCTGAGTGATGATGAAGATAGGGAAGATGAATCTGATTATGCTTCTGCTTTACCAGAAGACCATTGGGATTCTCCAGTCCATGAAGATTCTGGGCAGAAAGATCCTGCTGTTTCTGTGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTACTGTACAGTCCCAGGCAGAAGAACAATGGGAAGCACCTTGTGATAATTCAGAAAAAAAGGAAAGTGAGTATATAATTGCTGATGCAGCTGCTGCTGCACGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAGTCCCCTTTTCTACTCAAGTACTCTCTTCGTGAATATCAACATATTGGATTGGATTGGCTTGTTACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAAACTATCATGACTATAGCTTTGCTTGCACATCTTGCCTGTGACAAGGGGATTTGGGGCCCACATCTAATCGTGGTACCTACTAGTGTAATGCTCAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCTTTTAAAATTTTGACTTATTTTGGAAATGCGAAGGAGAGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCGTTTCATATATGCATAACGACTTATAGACTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGGATTCTTTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAATCGCACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAACGTCCTTCGGCCATTCTTACTCCGTCGATTAAAGCGAGATGTGGAAAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGGTTGTCTAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACCCAAGCCACTCTTGCAAGCGCCAACTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGACCTATTGTCAGTTCATTTGACATGTGTGGTATTGATATTCAGTTAAGTTCGTCTGTTTGCTCCATGCTTTTGCCTAGTTTCTTTTCAACAGTGGACCTAAGAGGTTTAGGCCTTTTATTTACTCATCTTGACTATAGCATGGCTTCTTGGGAGAGTGATGAAGTGCAAGCTATTGAGACCCCTGCAACTTTAATCATGGAACGCACTGATATGTCTGACCTAGAAGTAATTAGGCCTGGACTGAAATGTCAAAAAAAGCTACAAGGAACCAACATTTTTGAAGAGATCCAAAGGGCAATTTGGGAAGAGAGGCTAAGACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGGCCCATCTATCCAACGACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTCACCAGATGAAGGCAAACCCTGTTTCATACTTGTACTCATCAAAGCTGGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAAAAGATGACCGATGTGGTTGAAAGTTTTATGTTTGCAATTCCTGCCGCTCGAGCACCCTCTCCTGTTTGCTGGTGCAGTAAAAGTGAGACAACCGTGTTTCTGCACCCATCTTACAAGCAGCGATGCTCTGATGTTCTGTCACCACTACTGTCACCAATCAGGCCTGCAATTGTTCGCCGGCAAGTGTATTTCCCAGATAGACGTCTTATACAATTTGACTGTGGGAAACTGCAGGAGCTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACCCAAATGACTAAGATGCTTGACTTACTAGAGTCGTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTGGTTGGAGCTGACACAGTTATTTTCTATGATAGCGATTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAAAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTGGTTATACAAAGTGGGGGTTATAACACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATTAAAAACATGCCAAAGGAGAAAAACCAGAACAATGGAGAAGTTTCTGTAACTAATGCAGATGTAGAGGCTGCATTAAAATATGTAGAAGACGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAAGCTGTGGACAACCAGGAATTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAGTGTGTGAATGATGATGATGAGCCTGCAGAATTAGGTGAATCTGTTTCCAATTTGAATAAAGAGAATGCATTGATGTTAAATGGAAGTGACCCTAAGGAAGATAGACCACCATCTGTTGCTGCCAAAGAAGATGATGTTGACATGCTGGCTGATGTGAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCCTTTGAGAATGAGCTGCGCCCTATTGATCGATATGCCATTCGTTTTCTGGAGCTCTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCCGGATTGAGGACACTGAATGGGAGTTGGATCGCATTGAAAAGTATAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTACGGCATATCGACAGCATGTAGAAGCCTTGGCTCAACATCGGTTAATGGAGGAGCTCGAATATGAAGCTAAACAGAGAGAGGAAGCTGAGGAAGAAAATTTTGATTCTAAAAACAGGACTCAAACACCAAGTGATTCAAAGCCCAAACCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCCTTAACCTCTGGCTTGAGACATGTGAAAGAAGAGCCACAAGCAGAGCCAATGAGTATAGATGATGAGGCTGCCACTAGTCTGGATTTTGTGTCTCCAAATTCAACTATGCAGAAGAAACGTAAGAAGTCTAAATTAACAACTGATGGTGATGAAAAGAGACTTAAGAAGTCCAAAAAATCCAAGAGGGATCCTGCTGACATTTATGCTTCAGACATAGAATCCAACACATTAGTTGTGCAGGATGAACATGCAGAATCAAAGCTATGTGAAAGTCTGGGTGATGTGGAACAGAAAACTACTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCAGTGAAACGGATCTTGATGATAAAACCAGAAAAATTGAAGAAGGGAAATCTTTGGTCTAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACACTTTATGGAATGACTGCTGGCGGGGCATATAGGGGGAGATATCGTCACCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTATTCCAAAAATATGTCTTGTTCTCGATGGACAATGCAAATCATGAAAAGAACAACAATGCTGGCTCTGGAAAGGCTCTTCTTAAAGTGACAGAGGATAACATTCGGATGTTGTTAGATGTTGCTTCTGAGCAAGTAAATAGAGAGTTACTACTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGCCTGGAAGGTGGCATCACATGTCGACCGCAGGCAAAATTCATCGGCCACCTGTAACGGTCTCTATTTCGATCAGAGTTTCTTCACTTCCATTGGTCAGCATTCACAAAATTCCCTGAACAAACCCTCTGACAGGATGACATTTGCTAATTTGGCCCAGAGCAAGAAATTATTAGCAGCTGCACTTGATGACGCCAGAATTAGGCAAGAAAATGACAAAATCTTCCTCTCTAACCAGGGTGAAGAGATGCCAGTGAGTGCAGATCATCTGGATCTAACTCTAGAGTTCCAGAAAGAGGAGAGTGATTCCTTATCTTCATTTCCATCTGTTATAAATTTATCAATAGAAGGGACTGAAGCGCCACCATCCTTAAATAAGCAAACAGTAGAAGATGATCATCTTAAAGCTGGTTTTTCTAATGTTGAGAATCGTTTCAGGGAATCTGCAAGAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCATCAGCATTCCCAACAAATGATGCAAAGTCTCGACCTGGATCCAGGATACAGTCTTTTGGAAAGCAAAAGTCTTCCACCTCTGACTTTAATAAGCCGTCTAGGTCGAAGTCCAAAAGAGCTTCAACGGATCCTAATGAAATGCATCACCATCAGGCTGAGCCATCATTCCAGTCAATGCCACCACTCAAGGATGTGAAATTTGATCTCCCTTCATGCACCGTGGACCAATTTGGAATTGATTTGGATAGCAATCTCTCCTTTGATTCGAATGGGGAAAGTTCATTGGAAATGGAATATTTTGGAGTGGTCCCGCATGATTATGTTGCTGATTTAATCTCAGGCCTTGATGATTGTACAGAATTCCCTGAATACACTGACATTAGATAG 6204 0.4141 MASKGPKSRIDHETRAKRQKTLEASREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVFYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAYKPAEKNSAQHHMSIQYKDVDEDIINELKEANVAEDQSDAPDHDEEYDVQSDDELEDDEQTLEEDEAHITKEERQEELAALYDEMNLPIEELRKRYAGERGESVRQESSPAHSEDGGKIVRTGDADENGDLLSVSKIATNNSGMVPGRRCDESNGDVATPTNNLSQCEDCQSEDLEEVPSETANENSAYDFTDEEEDGDFSFDTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELAARYEKIALLLKESDMPVEEPVARYEKDLSDDEDREDESDYASALPEDHWDSPVHEDSGQKDPAVSVDEDIKSGEHLATVQSQAEEQWEAPCDNSEKKESEYIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGNAKERKHKRQGWLKPNSFHICITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSMLLPSFFSTVDLRGLGLLFTHLDYSMASWESDEVQAIETPATLIMERTDMSDLEVIRPGLKCQKKLQGTNIFEEIQRAIWEERLRQAKERAAAIAWWNSLRCKKRPIYPTTLRDLVTIRHPVYDIHQMKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPSPVCWCSKSETTVFLHPSYKQRCSDVLSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDLLESFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNNGEVSVTNADVEAALKYVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDECVNDDDEPAELGESVSNLNKENALMLNGSDPKEDRPPSVAAKEDDVDMLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATTAYRQHVEALAQHRLMEELEYEAKQREEAEEENFDSKNRTQTPSDSKPKPKKKPKKAKFKSLKKGSLTSGLRHVKEEPQAEPMSIDDEAATSLDFVSPNSTMQKKRKKSKLTTDGDEKRLKKSKKSKRDPADIYASDIESNTLVVQDEHAESKLCESLGDVEQKTTGRSKMGGKISITPMPVKRILMIKPEKLKKGNLWSKDCIPSADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGAYRGRYRHPVHCCERFRELFQKYVLFSMDNANHEKNNNAGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSAWKVASHVDRRQNSSATCNGLYFDQSFFTSIGQHSQNSLNKPSDRMTFANLAQSKKLLAAALDDARIRQENDKIFLSNQGEEMPVSADHLDLTLEFQKEESDSLSSFPSVINLSIEGTEAPPSLNKQTVEDDHLKAGFSNVENRFRESARACEEDSSGWASSAFPTNDAKSRPGSRIQSFGKQKSSTSDFNKPSRSKSKRASTDPNEMHHHQAEPSFQSMPPLKDVKFDLPSCTVDQFGIDLDSNLSFDSNGESSLEMEYFGVVPHDYVADLISGLDDCTEFPEYTDIR* 2068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00682 2067 Gene3D - 1661 1722 - -
Rops6g00682 2067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1080 1230 IPR001650 -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 307 321 - -
Rops6g00682 2067 Coils Coil 1416 1436 - -
Rops6g00682 2067 FunFam Photoperiod independent early flowering protein 1661 1722 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1971 1989 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1562 1588 - -
Rops6g00682 2067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 759 1261 IPR027417 -
Rops6g00682 2067 Coils Coil 1293 1313 - -
Rops6g00682 2067 Coils Coil 207 227 - -
Rops6g00682 2067 Gene3D - 1048 1294 IPR027417 -
Rops6g00682 2067 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Rops6g00682 2067 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 781 846 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 178 370 - -
Rops6g00682 2067 Gene3D - 504 780 IPR038718 -
Rops6g00682 2067 Pfam HSA domain 27 93 IPR014012 -
Rops6g00682 2067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 509 757 IPR027417 -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1479 1588 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1937 1970 - -
Rops6g00682 2067 Pfam SNF2-related domain 552 824 IPR000330 GO:0005524|GO:0140658
Rops6g00682 2067 CDD SF2_C_SNF 1065 1200 - -
Rops6g00682 2067 FunFam Photoperiod-independent early flowering 1 505 780 - -
Rops6g00682 2067 CDD DEXQc_SRCAP 535 757 - -
Rops6g00682 2067 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1047 1296 - -
Rops6g00682 2067 PANTHER HELICASE SRCAP-RELATED 16 1969 - -
Rops6g00682 2067 SMART ultradead3 531 724 IPR014001 -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 191 215 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1 32 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 439 462 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1479 1503 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 416 462 - -
Rops6g00682 2067 Pfam Helicase conserved C-terminal domain 1079 1189 IPR001650 -
Rops6g00682 2067 SMART helicmild6 1106 1189 IPR001650 -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 1934 2000 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 216 232 - -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 239 277 - -
Rops6g00682 2067 Coils Coil 1467 1487 - -
Rops6g00682 2067 Gene3D - 781 849 - -
Rops6g00682 2067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 547 712 IPR014001 -
Rops6g00682 2067 SMART bromneu2 23 94 IPR014012 -
Rops6g00682 2067 MobiDBLite consensus disorder prediction 340 365 - -
Rops6g00682 2067 ProSiteProfiles Myb-like domain profile. 1665 1718 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00682 Rops-Chr6 17575482 17605590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00682 503 827 RAD5 or RAD16-like Gene Family AT5G43530 28.610 7.10e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g00682 SNF2_N 2.4e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00682 K11661 - gmx:100794898 3402.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00682 6 17575482 17605590 Rops6g00682 6 17575482 17605590 ECH