Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00680 ATGGCTGAATGGAAGAAGTTAACAACGTTGGGGGAGGGTTCGTACGGCATTGTATCCCAAGCTGCAATTGTTGCCCCACAAGAATTGAGTGGGGATATCATAGCTGTTAAGAGTTCCAAGCCTAATATGTTTTATTCGTTGCAAAGAGAAGGATGCATATTGGAATCATTCTTTGGATGTAAAGAGATTCTTCAATGTATTTGGAGTCAAGTCACCGTCGAGAATGATCATTTAACCTACAATCTTCTCATGGAGTATGCCCCTTTTGGTTCACTTGGAGATTTAATCAAGAAGAGACCACTGTGTGAGAATGAAGTGAGAGTTTACACACGTATGCTTCTCAAAGGGCTTTATCGCATCCATCAACATGGAGTTGTTCATTGTGATCTAAAACCAGATAACATCCTTCTCTTTCCTTCATCTGAGTATGGTGCAAAATATCAACTGAAGATTGCAGATTTTGGATTGTCTAGGACTAAAGATGAAAAGTTTAATGCTGACTTTTGGAAGATCAAGTTTAGAGGGACACCAATTTACATGTCACCAGAATCAGTTATGGGACAAATTGAAGCACCATTAGATATATGGTCTCTTGGATGCATAGTAATCGAGATGCTCACCGGGTCACCCGCATTGAAGCTTCATGCTTTGGCAGACATAATGTTTAAGCTTGCATTCCTAAAAGAAGCACCTATGATACCTAATGAAGTGAGTGAGAATTGCAAAGATTTCTTGAATAAGTGTTTTGTGAAGGACCCTACAAAAAGATGGACCGCTGACATGCTTCTCCACCATCCTTTTCTTGATTTTTCTACAAGTGATAGGAGCGAAGATATAAAAAGACCCCCTATGTCTAGTTTTTCATTTTTCTCTTATGATATCGTCACATAA 891 0.3906 MAEWKKLTTLGEGSYGIVSQAAIVAPQELSGDIIAVKSSKPNMFYSLQREGCILESFFGCKEILQCIWSQVTVENDHLTYNLLMEYAPFGSLGDLIKKRPLCENEVRVYTRMLLKGLYRIHQHGVVHCDLKPDNILLFPSSEYGAKYQLKIADFGLSRTKDEKFNADFWKIKFRGTPIYMSPESVMGQIEAPLDIWSLGCIVIEMLTGSPALKLHALADIMFKLAFLKEAPMIPNEVSENCKDFLNKCFVKDPTKRWTADMLLHHPFLDFSTSDRSEDIKRPPMSSFSFFSYDIVT* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00680 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Rops6g00680 296 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00680 296 Gene3D Transferase(Phosphotransferase) domain 1 1 289 - -
Rops6g00680 296 ProSiteProfiles Protein kinase domain profile. 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00680 296 SMART serkin_6 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g00680 296 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Rops6g00680 296 SUPERFAMILY Protein kinase-like (PK-like) 3 273 IPR011009 -
Rops6g00680 296 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 280 - -
Rops6g00680 296 CDD STKc_MAPKKK 3 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00680 Rops-Chr6 17526047 17526937 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00680 3 295 MAP Kinase Kinase Kinase AT4G36950 39.474 1.72e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Rops6g00680 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00680 - - gmx:102667952 384.8