Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00676 ATGAATGAGAACAAGATTGATAATTTGGGACGGATTCAACAAAGCCATGGACTAAATGGTGACTTGAATTCTGAGTTTGGCAATTTTTCTTGTCAATATTTTGATATCAAACAGGCTTCAAATATGGGAACTTGCAATCAGCCTTTTACCATGGCTTGTGGTGGAGCAGTGGAACAGCAGCCATACATAGGCCAAGCCAAATCATCTAGCACAATTATCAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCAACTGAAATCTTCATGGGTTTCCCACAATATGATTGCCAAGTTGGTAATCCCTCTTTGATATCTCAATCCTCTAAGGTTAATGATTTGGAATTCCCTTTGTATCAAAGTCCAAGGGAAAACCTTTTCCTGGATTCAGCAAACCAACCTGACCCCTCCAATTTTGAGTTGTCAAATCCTTTGCAAGCAATGTTGAAATCTCAAGTGAATAGTGATCATCAATGTAATAATAGATCTCCTGAAAAATCTAATAAAATCCCATGTGGGAATTTTCCTGGTGGCAATTTTCTTCCAATTGAACAACATAAGTTGTTCATTGATGATGCTGCCTCAGTTAGTAGGAGCCCTTCCATTCCTTCTATTGGAAATCTGGATCACACAGTTTCTTGTGGCTCATATAAATTACCTGTTGCACAGCTTAGCTTCACTTCTCAGCAAGAGAAGCTGTCTCCAACATTCTCAGCAGGAAGTGTTACAACTACTTCTGGAAACCCTGCTTCTAATGGACCAGTAGTCTCAAGTAAAACACGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGTGCTGAGAAGGCAACACCAAAAGCTATATTGAGGCTGATGGAATCAGATGGATTGACCATTTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCTAAATACATGCCAGAGTCTACTCAGGGGAAATCTGATAAAAGAACCCATGTAGAGAGTGTGCATCTTGATGTCAAAACTGGCTTGCAAATCAGAGAAGCACTTCAACTGCAACTAGATGTTCAGAGGCATCTTCATGAACAGCTAGAGATTCAAAGAAAATTACAGTTGAGGATTGAGGAACAAGGTAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAAATGGTAGCCTCTTGAATACAGCTAATAATGATAAACCAATTAGTCCTAAAGATGTTGAGGTTTCCATTTCTGAAGGGTCTGGAAATTCCCTATTCCCTTCCAAGATAAGTTAG 1281 0.3958 MNENKIDNLGRIQQSHGLNGDLNSEFGNFSCQYFDIKQASNMGTCNQPFTMACGGAVEQQPYIGQAKSSSTIISRFESPASAFYATEIFMGFPQYDCQVGNPSLISQSSKVNDLEFPLYQSPRENLFLDSANQPDPSNFELSNPLQAMLKSQVNSDHQCNNRSPEKSNKIPCGNFPGGNFLPIEQHKLFIDDAASVSRSPSIPSIGNLDHTVSCGSYKLPVAQLSFTSQQEKLSPTFSAGSVTTTSGNPASNGPVVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPESTQGKSDKRTHVESVHLDVKTGLQIREALQLQLDVQRHLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTNGSLLNTANNDKPISPKDVEVSISEGSGNSLFPSKIS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00676 426 MobiDBLite consensus disorder prediction 411 426 - -
Rops6g00676 426 Pfam MYB-CC type transfactor, LHEQLE motif 342 389 IPR025756 -
Rops6g00676 426 MobiDBLite consensus disorder prediction 392 426 - -
Rops6g00676 426 Gene3D - 258 317 - -
Rops6g00676 426 Coils Coil 345 365 - -
Rops6g00676 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 240 399 IPR044848 GO:0003700
Rops6g00676 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 316 IPR017930 -
Rops6g00676 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 259 314 IPR006447 GO:0003677
Rops6g00676 426 SUPERFAMILY Homeodomain-like 257 313 IPR009057 -
Rops6g00676 426 Pfam Myb-like DNA-binding domain 263 312 IPR001005 -
Rops6g00676 426 MobiDBLite consensus disorder prediction 237 258 - -
Rops6g00676 426 FunFam Myb family transcription factor 258 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00676 Rops-Chr6 17374841 17377400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00676 242 386 G2-like Transcription Factor Family AT4G28610 58.667 9.88e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g00676 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00676 - - gmx:100780919 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00676 6 17374841 17377400 Rops6g00676 6 17374841 17377400 ECH