Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00673 ATGAGTTCTGGTTCTGCGACCAAAGCACCACCACCACCACCACCACCCTCTTCCTCCTCTGTGCCCAACTCCTCCACTGAGTCCCTTGATGGCTTGAAGTTTGGCCAAAAAATTTATTTTGAGGATGTGAGTGTTGGAGCTAAGGCCAAACCAAGTGGTGGGGCCTCAAAGAAGGGAAGGGGTAGTGCAGTTCATGCAACTCAGCCTCCAAGGTGTCAGGTTGAGGGCTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCATTCTAAATCCCCCACTGTCGTTGTCGCTGGTCTGGAACAAAGGTTTTGCCAACAATGTAGCAGATTTCATCAGCTTTCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCGTGCTCCTTATTAACCTCACCTTATGCCAGACTTTCTTCACCTATTTTTGATACCAATGGCAGAGGTGGTGGCTTTCTGATGGAATTTGCTTCATACCCAAAGCTTACTCTGAGTAATGAATTGCCAACTCCCAGATCATCTGAGCCAGTTCCTGGTAATCAACCTACAACACTTACCTGGCAGGCGAATATGCAGACACCATCTGACTTTTTCCTGCAAGATTCAGTGGGTGTGACAAGCTTCCCTGGTCACAGACATCCTCCAGTGGAAAGTTACACTGAAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATCATGGGGTTCTAGAAACACCACACCAAGTGTTGAGCTGAACAACTTGTTTAATTTCAATGGGACACTCATGACACAACTTGCTGCATCCTCTCAAGTTGCAGCCATCCATCAACTTCCCAATGCCTCATGGGATTTCAAAGGCATTGATTCTGGTAATTGTTCACCTGAGGTTGTGCCTGATCTCGGTCTGGGTCAGATTTCACAGCCTCTTCATAGCCATCATCCTGGTGAGCTTGGTGTGTCACAGGAAGGCATGAGGCATTACATGGATCTAGGGCAGTCCAGGGCCTGTGAGTCTCCTCACTGGTCACTTTAA 1089 0.4775 MSSGSATKAPPPPPPPSSSSVPNSSTESLDGLKFGQKIYFEDVSVGAKAKPSGGASKKGRGSAVHATQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVVVAGLEQRFCQQCSRFHQLSEFDQGKRSCRRRLAGHNERRRKPPPCSLLTSPYARLSSPIFDTNGRGGGFLMEFASYPKLTLSNELPTPRSSEPVPGNQPTTLTWQANMQTPSDFFLQDSVGVTSFPGHRHPPVESYTEVTDSSCALSLLSSQTSWGSRNTTPSVELNNLFNFNGTLMTQLAASSQVAAIHQLPNASWDFKGIDSGNCSPEVVPDLGLGQISQPLHSHHPGELGVSQEGMRHYMDLGQSRACESPHWSL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00673 362 SUPERFAMILY SBT domain 70 149 IPR036893 GO:0003677|GO:0005634
Rops6g00673 362 MobiDBLite consensus disorder prediction 49 68 - -
Rops6g00673 362 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Rops6g00673 362 Pfam SBP domain 72 145 IPR004333 GO:0003677
Rops6g00673 362 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g00673 362 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Rops6g00673 362 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Rops6g00673 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 329 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00673 Rops-Chr6 17272925 17278961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00673 32 362 SBP-box Gene Family AT2G42200 41.322 2.46e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops6g00673 SBP 3.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00673 - - gmx:100789301 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00673 6 17272925 17278961 Rops6g00673 6 17272925 17278961 ECH