Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00672 ATGGCTCCTTCAAGAAAAGATTTCAAGCCCACAGATGTTGAACTCCTTCAATGTTTTCTCTACAATAAGATTCATGGCAAACCTTTGCCTAACGATGCTACCATTCTTGAATATGACTTGTACGGTGAAAAGAACCCTTGGGAGATTTGGGAAGAGTTTGGAGGTACCTACTCTTATGATGGAAAGGACCTCTACTTCTTCACCATCCTAAAGAAGAAGTCTAGCTCACGCTATGTTCGCACCATTGGCATGGGTTCATGGGAAAGTGAAGATGGTGGGATAGTTATAATGGATACAAACCAAAAAGTAGGCTTAAAGAAACGTTATCGTTTTGAGAAGAGTCGCACTGACCAAGATGGTAGATGGATCATGCATGAATACAGTCTTGACTCATCTTTGCTAAGCAATACTTCGGCCGATAATTATGTCCTTTGCATATTTAGAAAGCATTTGGGACATAAAAGAGGTACGCCAAATACTAAGCAAGAAAAGACCAAGGTCAAAAGACAAAGGAAGACCATTGTTCTTGGACTTGAGGCTAACAACGAATCGGACAACAATGATGTTCTGTTGGGGGAAGGTATTTACCAAGGACCAGAAAACCATACAAACAGTGGAGACAACAGGACCAAGTTGGTTGAAACTACAAATAGAACAGAGTCCGAATATGAGGAAGAAGAAGGTGATCTCAGTGATCTCCCTATGTCTTGGCCTGAGTTATTTTCATTGCAGATGAGAGGGTTTGAAGGAAGTGAGATCCAAGAGGAAGACATCACCATGCTTCCGGATGAATTTTACAAGGATTTATTGTTGGAAAATATTGATATTATTTACATGAATGGTAAATAG 849 0.4005 MAPSRKDFKPTDVELLQCFLYNKIHGKPLPNDATILEYDLYGEKNPWEIWEEFGGTYSYDGKDLYFFTILKKKSSSRYVRTIGMGSWESEDGGIVIMDTNQKVGLKKRYRFEKSRTDQDGRWIMHEYSLDSSLLSNTSADNYVLCIFRKHLGHKRGTPNTKQEKTKVKRQRKTIVLGLEANNESDNNDVLLGEGIYQGPENHTNSGDNRTKLVETTNRTESEYEEEEGDLSDLPMSWPELFSLQMRGFEGSEIQEEDITMLPDEFYKDLLLENIDIIYMNGK* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00672 282 Gene3D NAC domain 11 152 IPR036093 GO:0003677|GO:0006355
Rops6g00672 282 Pfam No apical meristem (NAM) protein 7 129 IPR003441 GO:0003677|GO:0006355
Rops6g00672 282 ProSiteProfiles NAC domain profile. 2 150 IPR003441 GO:0003677|GO:0006355
Rops6g00672 282 PANTHER NAC TRANSCRIPTION FACTOR 56 7 200 - -
Rops6g00672 282 SUPERFAMILY NAC domain 7 146 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00672 Rops-Chr6 17200949 17202949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00672 8 149 NAC Transcription Factor Family AT1G32770 34.161 3.18e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g00672 NAM 8.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00672 - - mtr:11433340 258.84