Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00670 ATGGATCAATTTTCTCAATTATTGATTAATGGAAACACCACCAACATGTTAAATGAATGGACTTTCTCTGATGACCGAGCCTTTGAGCGAGCACTGTTAATCTACCCGGAAGGCATAGCAAATAAATGGGAGAAAGTCGCCAGTTTGGTTCCTGGTCGTTCTCCAACAGAGGTTGGGGAACACTATAATGCATTGCTTCACGATTTATCCTTGATTGAGTCGGGTCATATCAAGTTGCCAAATTATTCAGATGACTCGATTCTAGAGACAATAATAGAAATTGGTGATTCATCAAAGAAGGTATCTCCCCATCAGAACAAGAAATGGACAAAAGAGGAACACAGATTATTTCTCATGGGACTTGAGAAATTTGGTAGGGGAGATTGGAGAAACATTTCAAGGTATTTTGTCGTGTCAAAAACTCCAACGCAAGTTGCTAGTCATGCACAAAAATACTTCATTCGCCAAAGTGTCACGACAGAAAAGAGGAAGAGAAAAAGCATCCATGACATAACCTTAATGAATAGTGATTCGACCATTTACCTCCCTCCAAATGTTCCAATGCAGGAATTACAACAAGCACAAGAAATGAACCAGTTAAACCCAACAAACGATATGGCTCATCAAATGCAAGAATTTGTGCATTCATTGATGGAGCTTTTAAATGAATGA 672 0.3884 MDQFSQLLINGNTTNMLNEWTFSDDRAFERALLIYPEGIANKWEKVASLVPGRSPTEVGEHYNALLHDLSLIESGHIKLPNYSDDSILETIIEIGDSSKKVSPHQNKKWTKEEHRLFLMGLEKFGRGDWRNISRYFVVSKTPTQVASHAQKYFIRQSVTTEKRKRKSIHDITLMNSDSTIYLPPNVPMQELQQAQEMNQLNPTNDMAHQMQEFVHSLMELLNE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00670 223 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Rops6g00670 223 CDD SANT 19 66 IPR001005 -
Rops6g00670 223 Gene3D - 16 79 - -
Rops6g00670 223 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Rops6g00670 223 ProSiteProfiles Myb-like domain profile. 108 153 IPR001005 -
Rops6g00670 223 FunFam Transcription factor SRM1 12 79 - -
Rops6g00670 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 157 IPR017930 -
Rops6g00670 223 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 156 IPR006447 GO:0003677
Rops6g00670 223 Gene3D - 107 158 - -
Rops6g00670 223 SUPERFAMILY Homeodomain-like 106 157 IPR009057 -
Rops6g00670 223 SMART sant 105 155 IPR001005 -
Rops6g00670 223 SMART sant 16 68 IPR001005 -
Rops6g00670 223 ProSiteProfiles Myb-like domain profile. 18 66 IPR001005 -
Rops6g00670 223 ProSiteProfiles SANT domain profile. 104 157 IPR017884 -
Rops6g00670 223 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 18 213 IPR043363 -
Rops6g00670 223 CDD SANT 108 153 IPR001005 -
Rops6g00670 223 FunFam transcription factor MYB1R1 107 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00670 Rops-Chr6 17168615 17170037 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g00670 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00670 - - gmx:548010 191.815