Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00647 ATGGAGCTAAGCTTGGATTTGAGTTTGGCCTGTGTCCCCAAAACCGTTTCTTTGTTTCTTGGTGACATTTCTAGAAGCAAAGACATGTCTGAGAAACTGGCCTTGCTTGAGAAATTTGTGCAAATACTGGAGGATGAAATGAGAAAAGTAGAGGCCTTCAAACGCGAACTCCCTCTTTGCATGCTCCTCATAAACGATGCCATTACAAGATTCAAAGAAGAAAAAATCCGGTGTATGGGTATGCAAGATCCACCAGTGACTGAAGAATTGATGCCACTGAAAACCAATTATGGAGGAAATGGAAAAGGACCCTTGACCATGGCAAAGGAAAGTGGTGACAAGAAGAATTGGATGAGTTCAGCTCAGCTATGGACCACTGAAACCAAATTGAGGAATGAAGAAGATGATAAGTCTGTGCCTGATCACCCAATTCAGCAACGGGATCAGAAGAACAATAGTGGAGGAACATTGATCGCATTTAATGGAAATCCGTGTGTACCCAAGCAAGTTTCTTCACCAGTTCCAAGCTTTAGTTTGATGAGTCCTGCATCTGAACTGAGTCATAGCAATTCCAAGAGTGGTTGTGGAGGTAGTAGTTCTGGCTCTTCTTTGCTCCGTGTTGAGATGCAGAGTCAACCACAACATCTGCAGCAGAATCCAAGGAAACAAAGGCGATGCTGGTCACCGAAGCTTCATCGGCGTTTTGTTGATGCGCTTCAACAACTTGGTGGAGCACAAGTGGCAACTCCTAAACAAATTAGAGAACTGATGCAGGGGGAAGTTTTCTATGCACCAGGTCATGTTTTAAGGGATGAGGTATTTGATGGTGCAGAAGCAGTGCGTCAAATGGCGAACTGGTTGATTGAAAATCATGGTTTTAGAATACTTTCATTCAACTCATGA 903 0.4341 MELSLDLSLACVPKTVSLFLGDISRSKDMSEKLALLEKFVQILEDEMRKVEAFKRELPLCMLLINDAITRFKEEKIRCMGMQDPPVTEELMPLKTNYGGNGKGPLTMAKESGDKKNWMSSAQLWTTETKLRNEEDDKSVPDHPIQQRDQKNNSGGTLIAFNGNPCVPKQVSSPVPSFSLMSPASELSHSNSKSGCGGSSSGSSLLRVEMQSQPQHLQQNPRKQRRCWSPKLHRRFVDALQQLGGAQVATPKQIRELMQGEVFYAPGHVLRDEVFDGAEAVRQMANWLIENHGFRILSFNS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00647 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 222 260 IPR006447 GO:0003677
Rops6g00647 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 258 IPR044787 GO:0003700|GO:0006355
Rops6g00647 300 MobiDBLite consensus disorder prediction 129 164 - -
Rops6g00647 300 MobiDBLite consensus disorder prediction 96 117 - -
Rops6g00647 300 MobiDBLite consensus disorder prediction 145 164 - -
Rops6g00647 300 MobiDBLite consensus disorder prediction 176 203 - -
Rops6g00647 300 SUPERFAMILY Homeodomain-like 220 257 IPR009057 -
Rops6g00647 300 MobiDBLite consensus disorder prediction 129 144 - -
Rops6g00647 300 Coils Coil 36 56 - -
Rops6g00647 300 Gene3D - 221 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00647 Rops-Chr6 16855586 16859360 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00647 1 258 G2-like Transcription Factor Family AT4G37180 39.394 1.58e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g00647 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00647 - - pvu:PHAVU_002G021400g 298.13